In recent years an increasing number of inherited diseases in man have been identified in which there is an impairment in mitochondrial fatty acid beta-oxidation. This includes long-chain 3-hydroxyacyl-CoA dehydrogenase deficiency, first identified in 1989 (Wanders et al 1989) and now described in the literature in at least twelve additional patients. Identification of long-chain 3-hydroxyacyl-CoA dehydrogenase deficiency in patients suspected to suffer from this enzyme defect is usually done in cultured skin fibroblasts. Correct diagnosis of long-chain 3-hydroxyacyl-CoA dehydrogenase deficiency is hampered by the fact that the short-chain enzyme is also reactive with long-chain substrates, which explains the relatively high levels of residual activity in fibroblasts from long-chain 3-hydroxyacyl-CoA dehydrogenase-deficient patients, amounting to 25% of control values (see e.g. Wanders et al 1990). Residual activities are even higher in leukocytes from these patients, amounting to 50-60% of control levels (Wanders and IJlst, 1992), owing to the fact that leukocytes contain only little long-chain 3-hydroxyacyl-CoA dehydrogenase activity compared to the activity of the short-chain enzyme. We now report that N-ethylmaleimide (NEM) inhibits the long-chain enzyme but not the short-chain enzyme. This novel finding allows accurate determination of long-chain 3-hydroxyacyl-CoA dehydrogenase activity, which is of great importance for correct pre- and postnatal diagnosis in leukocytes and chorionic villi (fibroblasts), respectively.