TERMINATORS OF TRANSCRIPTION WITH RNA-POLYMERASE FROM ESCHERICHIA-COLI - WHAT THEY LOOK LIKE AND HOW TO FIND THEM

被引：109

作者：

BRENDEL, V ^{[1
]}

HAMM, GH ^{[1
]}

TRIFONOV, EN ^{[1
]}

机构：

[1] EUROPEAN MOLEC BIOL LAB, EMBL DATA LIB, D-6900 HEIDELBERG, FED REP GER

来源：

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS | 1986年 / 3卷 / 04期

关键词：

D O I：

10.1080/07391102.1986.10508457

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

070307 [化学生物学]; 071010 [生物化学与分子生物学];

摘要：

We present here a compilation of prokaryotic transcription terminator sequences (ref. 1-152). The compilation includes 49 independent terminators, 52 speculated independent terminators, 27 sites shown to function in vivo, and some 20 proven or speculated rho-dependent terminators. In addition to the well-known features of independent terminators (dyad symmetry and T-run), two consensus sequences are found: CGGG(C/G) upstream and TCTG downstream of the termination point. A subset of the collection of sequences has been used to construct a computer algorithm to locate independent terminators by sequence analysis.

引用

页码：705 / 723

页数：19

共 165 条

[1]

CONTROL OF TRANSCRIPTION TERMINATION [J].

ADHYA, S ;

GOTTESMAN, M .

ANNUAL REVIEW OF BIOCHEMISTRY, 1978, 47 :967-996

[2]

NUCLEOTIDE-SEQUENCE ANALYSIS OF THE CHLORAMPHENICOL RESISTANCE TRANSPOSON TN9 [J].

ALTON, NK ;

VAPNEK, D .

NATURE, 1979, 282 (5741) :864-869

[3]

ORGANIZATION AND NUCLEOTIDE-SEQUENCE OF A NEW RIBOSOMAL OPERON IN ESCHERICHIA-COLI CONTAINING THE GENES FOR RIBOSOMAL-PROTEIN S2 AND ELONGATION-FACTOR TS [J].

AN, G ;

BENDIAK, DS ;

MAMELAK, LA ;

FRIESEN, JD .

NUCLEIC ACIDS RESEARCH, 1981, 9 (16) :4163-4172

[4]

THE NUCLEOTIDE-SEQUENCE OF TUFB AND 4 NEARBY TRANSFER-RNA STRUCTURAL GENES OF ESCHERICHIA-COLI [J].

AN, G ;

FRIESEN, JD .

GENE, 1980, 12 (1-2) :33-39

[5]

TRANSCRIPTION OF BACTERIOPHAGE-PHIX174 INVITRO - SELECTIVE INITIATION WITH OLIGONUCLEOTIDES [J].

AXELROD, N .

JOURNAL OF MOLECULAR BIOLOGY, 1976, 108 (04) :753-770

[6]

DNA-SEQUENCE FROM HISTIDINE OPERON CONTROL REGION - 7 HISTIDINE CODONS IN A ROW [J].

BARNES, WM .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1978, 75 (09) :4281-4285

[7]

ATTENUATION AND PROCESSING OF RNA FROM THE RPLJL-RPOBC TRANSCRIPTION UNIT OF ESCHERICHIA-COLI [J].

BARRY, G ;

SQUIRES, C ;

SQUIRES, CL .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1980, 77 (06) :3331-3335

[8]

NUCLEOTIDE-SEQUENCE OF BACTERIOPHAGE-FD DNA [J].

BECK, E ;

SOMMER, R ;

AUERSWALD, EA ;

KURZ, C ;

ZINK, B ;

OSTERBURG, G ;

SCHALLER, H ;

SUGIMOTO, K ;

SUGISAKI, H ;

OKAMOTO, T ;

TAKANAMI, M .

NUCLEIC ACIDS RESEARCH, 1978, 5 (12) :4495-4503

[9]

NUCLEOTIDE-SEQUENCE OF THE GENE OMPA CODING THE OUTER-MEMBRANE PROTEIN-II-STAR OF ESCHERICHIA-COLI-K-12 [J].

BECK, E ;

BREMER, E .

NUCLEIC ACIDS RESEARCH, 1980, 8 (13) :3011-3027

[10]

NUCLEOTIDE-SEQUENCE AND GENOME ORGANIZATION OF FILAMENTOUS BACTERIOPHAGES FL AND FD [J].

BECK, E ;

ZINK, B .

GENE, 1981, 16 (1-3) :35-58

← 1 2 3 4 5 6 7 8 9 10 →