A MOLECULAR-DYNAMICS SIMULATION OF A WATER DROPLET BY THE IMPLICIT-EULER LANGEVIN SCHEME

被引:20
作者
SCHLICK, T
FIGUEROA, S
MEZEI, M
机构
[1] CUNY HUNTER COLL,DEPT CHEM,NEW YORK,NY 10021
[2] CUNY HUNTER COLL,CTR STUDY GENE STRUCT & FUNCT,NEW YORK,NY 10021
[3] CUNY HUNTER COLL,GRAD CTR,NEW YORK,NY 10021
关键词
D O I
10.1063/1.459935
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Results are presented from potential energy minimization of water clusters and from molecular dynamics and Monte Carlo simulations of a liquid water droplet model. A new method for molecular dynamics - the implicit-Euler/Langevin scheme - is used in combination with a truncated Newton minimizer for potential energy functions. Structural and thermodynamic properties are reported for the scheme (with time steps of 5 and 10 fs), compared to a standard explicit formulation (with DELTA-t = 1 fs), to a Monte Carlo simulation, and to available experimental data. Results demonstrate that the implicit scheme is computationally feasible for large-scale biomolecular simulations, and that the droplet model can reasonably reproduce general structural features of liquid water. Results also show that the desired behavior is obtained form the implicit formulation: stability over large time steps, and effective damping of the high-frequency vibrational modes. Thus, major "bulk" properties of the system of interest may be observed more rapidly.
引用
收藏
页码:2118 / 2129
页数:12
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