THE SELF-CLEAVAGE OF LARIAT-RNA

被引:24
作者
AGBACK, P [1 ]
GLEMAREC, C [1 ]
YIN, L [1 ]
SANDSTROM, A [1 ]
PLAVEC, J [1 ]
SUND, C [1 ]
YAMAKAGE, S [1 ]
VISWANADHAM, G [1 ]
ROUSSE, B [1 ]
PURI, N [1 ]
CHATTOPADHYAYA, J [1 ]
机构
[1] UNIV UPPSALA,CTR BIOMED,DEPT BIOORGAN CHEM,BOX 581,S-75123 UPPSALA,SWEDEN
关键词
D O I
10.1016/S0040-4039(00)79266-5
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
Lariat-RNAs 3 and 4 undergo site-specific self-cleavage reaction at the G3 --> C6/U7 phosphodiester bond by the nucleophilic attack of 2'-OH of G3 sugar moiety to its 3-phosphate to give 5'hydroxyl terminal at C6 or U7 and 2, 3-cyclic phosphodiester of G3 whereas lariat-tetramer 1, pentamer 2, the cyclic-A(2' --> 5)G-tetramer 5 and the cyclic-A(3' --> 5')G-tetramer 6 are completely stable. The lariat-RNAs 3 and 4 are the smallest RNA known to undergo self-cleavage which is reminiscent of the RNA-hammerhead (Ribozyme) activity. The geometry of the cleavage-site in 3 and 4 has been defined by full conformational analysis by NMR and molecular dynamics calculation in water.
引用
收藏
页码:3929 / 3932
页数:4
相关论文
共 19 条
[1]   STRUCTURAL CHEMISTRY OF CYCLIC NUCLEOTIDES .2. CRYSTAL AND MOLECULAR-STRUCTURE OF SODIUM BETA-CYTIDINE 2',3'-CYCLIC PHOSPHATE [J].
COULTER, CL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1973, 95 (02) :570-575
[2]  
FOSTER AC, 1987, CELL, V50, P9
[3]  
FOSTER AC, 1987, CELL, V49, P211
[4]   NUCLEAR-MAGNETIC-RESONANCE STUDIES OF THE HAMMERHEAD RIBOZYME DOMAIN - SECONDARY STRUCTURE FORMATION AND MAGNESIUM-ION DEPENDENCE [J].
HEUS, HA ;
PARDI, A .
JOURNAL OF MOLECULAR BIOLOGY, 1991, 217 (01) :113-124
[5]   EFFECTS OF PHOSPHOROTHIOATE AND 2-AMINO GROUPS IN HAMMERHEAD RIBOZYMES ON CLEAVAGE RATES AND MG2+ BINDING [J].
KOIZUMI, M ;
OHTSUKA, E .
BIOCHEMISTRY, 1991, 30 (21) :5145-5150
[6]  
KOLLMAN P, 1991, AMBER 4 0
[7]   ALTERNATIVE TERTIARY STRUCTURE ATTENUATES SELF-CLEAVAGE OF THE RIBOZYME IN THE SATELLITE RNA OF BARLEY YELLOW DWARF VIRUS [J].
MILLER, WA ;
SILVER, SL .
NUCLEIC ACIDS RESEARCH, 1991, 19 (19) :5313-5320
[8]   SYNTHESIS AND NMR-STUDY OF RIBOOLIGONUCLEOTIDES FORMING A HAMMERHEAD-TYPE RNA ENZYME-SYSTEM [J].
ODAI, O ;
KODAMA, H ;
HIROAKI, H ;
SAKATA, T ;
TANAKA, T ;
UESUGI, S .
NUCLEIC ACIDS RESEARCH, 1990, 18 (20) :5955-5960
[9]   CHARACTERIZATION OF THE SECONDARY STRUCTURE AND MELTING OF A SELF-CLEAVED RNA HAMMERHEAD DOMAIN BY H-1-NMR SPECTROSCOPY [J].
PEASE, AC ;
WEMMER, DE .
BIOCHEMISTRY, 1990, 29 (38) :9039-9046