NONEXPONENTIAL NON-ARRHENIUS RELAXATION IN THE COURSE OF CO REBINDING TO HEME-PROTEINS

被引:25
作者
BERLIN, YA
FISCHER, SF
CHEKUNAEV, NI
GOLDANSKII, VI
机构
[1] TECH UNIV MUNICH, DEPT PHYS T38, D-85748 GARCHING, GERMANY
[2] RUSSIAN ACAD SCI, NN SEMENOV CHEM PHYS INST, MOSCOW 117334, RUSSIA
关键词
D O I
10.1016/0301-0104(95)00233-2
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The dispersive transport model for relaxation of photolyzed heme proteins has been improved to take into account the coupling of the ligand-heme geminate recombination and the non-Gaussian diffusive dynamics of conformational changes in heme proteins. Contrary to the earlier deterministic version of the model, the present more rigorous formulation is based on the stochastic approach to the problem. This implies that the time evolution of protein conformations should be described in terms of the transient distribution which satisfies the Smoluchowski-type differential equation with a time-dependent diffusion coefficient. The obtained analytical solution of this equation enables us to relate main kinetic parameters of the geminate recombination and quantities characterizing the ligand-heme interaction. The derived expressions demonstrate that the reaction barrier shifts with time towards higher values following the near-stretched exponential behavior in agreement with experiment. Such a behavior is governed by the non-exponential non-Arrhenius conformational relaxation, The latter process can be identified by the characteristic ''footprint'' left on the experimental rebinding curve and is shown to be responsible for some kinetically different phases of the ligand-heme geminate recombination observed within distinct temperature ranges.
引用
收藏
页码:369 / 385
页数:17
相关论文
共 67 条
  • [1] TRANSIENT KINETICS OF CHEMICAL-REACTIONS WITH BOUNDED DIFFUSION PERPENDICULAR TO THE REACTION COORDINATE - INTRAMOLECULAR PROCESSES WITH SLOW CONFORMATIONAL-CHANGES
    AGMON, N
    HOPFIELD, JJ
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1983, 78 (11) : 6947 - 6959
  • [2] CO BINDING TO HEME-PROTEINS - A MODEL FOR BARRIER HEIGHT DISTRIBUTIONS AND SLOW CONFORMATIONAL-CHANGES
    AGMON, N
    HOPFIELD, JJ
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1983, 79 (04) : 2042 - 2053
  • [3] DIFFUSIVE DYNAMICS ON POTENTIAL-ENERGY SURFACES - NONEQUILIBRIUM CO BINDING TO HEME-PROTEINS
    AGMON, N
    RABINOVICH, S
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1992, 97 (10) : 7270 - 7286
  • [4] THE TRANSITION FROM INHOMOGENEOUS TO HOMOGENEOUS KINETICS IN CO BINDING TO MYOGLOBIN
    AGMON, N
    DOSTER, W
    POST, F
    [J]. BIOPHYSICAL JOURNAL, 1994, 66 (05) : 1612 - 1622
  • [5] DETERMINATION OF WEIGHTED DENSITY-OF-STATES OF VIBRATIONAL-MODES IN ZN-SUBSTITUTED MYOGLOBIN
    AHN, JS
    KANEMATSU, Y
    ENOMOTO, M
    KUSHIDA, T
    [J]. CHEMICAL PHYSICS LETTERS, 1993, 215 (04) : 336 - 340
  • [6] BINDING OF CARBON-MONOXIDE TO ISOLATED HEMOGLOBIN CHAINS
    ALBERDING, N
    CHAN, SS
    EISENSTEIN, L
    FRAUENFELDER, H
    GOOD, D
    GUNSALUS, IC
    NORDLUND, TM
    PERUTZ, MF
    REYNOLDS, AH
    SORENSEN, LB
    [J]. BIOCHEMISTRY, 1978, 17 (01) : 43 - 50
  • [7] TUNNELING IN LIGAND-BINDING TO HEME PROTEINS
    ALBERDING, N
    AUSTIN, RH
    BEESON, KW
    CHAN, SS
    EISENSTEIN, L
    FRAUENFELDER, H
    NORDLUND, TM
    [J]. SCIENCE, 1976, 192 (4243) : 1002 - 1004
  • [8] [Anonymous], 1984, SPRINGER SERIES SYNE
  • [9] [Anonymous], 1996, TABLES INTEGRALS SER
  • [10] THE ROLE OF SOLVENT VISCOSITY IN THE DYNAMICS OF PROTEIN CONFORMATIONAL-CHANGES
    ANSARI, A
    JONES, CM
    HENRY, ER
    HOFRICHTER, J
    EATON, WA
    [J]. SCIENCE, 1992, 256 (5065) : 1796 - 1798