IMPROVED PREDICTIONS OF SECONDARY STRUCTURES FOR RNA

被引:817
作者
JAEGER, JA
TURNER, DH
ZUKER, M
机构
[1] UNIV ROCHESTER,DEPT CHEM,ROCHESTER,NY 14627
[2] NATL RES COUNCIL CANADA,DIV BIOL SCI,OTTAWA K1A 0R6,ONTARIO,CANADA
关键词
D O I
10.1073/pnas.86.20.7706
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
引用
收藏
页码:7706 / 7710
页数:5
相关论文
共 47 条
  • [1] STABILITY OF RIBONUCLEIC-ACID DOUBLE-STRANDED HELICES
    BORER, PN
    DENGLER, B
    TINOCO, I
    UHLENBECK, OC
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1974, 86 (04) : 843 - 853
  • [2] STRUCTURAL CONVENTIONS FOR GROUP-I INTRONS
    BURKE, JM
    BELFORT, M
    CECH, TR
    DAVIES, RW
    SCHWEYEN, RJ
    SHUB, DA
    SZOSTAK, JW
    TABAK, HF
    [J]. NUCLEIC ACIDS RESEARCH, 1987, 15 (18) : 7217 - 7221
  • [3] CONFORMATIONAL TRANSITIONS IN TRANSFER-RNAASP(BREWERS YEAST) - THERMODYNAMIC, KINETIC, AND ENZYMATIC MEASUREMENTS ON OLIGONUCLEOTIDE FRAGMENTS AND INTACT MOLECULE
    COUTTS, SM
    GANGLOFF, J
    DIRHEIMER, G
    [J]. BIOCHEMISTRY, 1974, 13 (19) : 3938 - 3948
  • [4] FREE-ENERGY OF IMPERFECT NUCLEIC-ACID HELICES .1. BULGE DEFECT
    FINK, TR
    CROTHERS, DM
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1972, 66 (01) : 1 - &
  • [5] IMPROVED FREE-ENERGY PARAMETERS FOR PREDICTIONS OF RNA DUPLEX STABILITY
    FREIER, SM
    KIERZEK, R
    JAEGER, JA
    SUGIMOTO, N
    CARUTHERS, MH
    NEILSON, T
    TURNER, DH
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1986, 83 (24) : 9373 - 9377
  • [6] STABILITY OF XGCGCP, GCGCYP, AND XGCGCYP HELIXES - AN EMPIRICAL ESTIMATE OF THE ENERGETICS OF HYDROGEN-BONDS IN NUCLEIC-ACIDS
    FREIER, SM
    SUGIMOTO, N
    SINCLAIR, A
    ALKEMA, D
    NEILSON, T
    KIERZEK, R
    CARUTHERS, MH
    TURNER, DH
    [J]. BIOCHEMISTRY, 1986, 25 (11) : 3214 - 3219
  • [7] CONTRIBUTIONS OF DANGLING END STACKING AND TERMINAL BASE-PAIR FORMATION TO THE STABILITIES OF XGGCCP, XCCGGP, XGGCCYP, AND XCCGGYP HELIXES
    FREIER, SM
    ALKEMA, D
    SINCLAIR, A
    NEILSON, T
    TURNER, DH
    [J]. BIOCHEMISTRY, 1985, 24 (17) : 4533 - 4539
  • [8] FREE-ENERGY CONTRIBUTIONS OF G.U AND OTHER TERMINAL MISMATCHES TO HELIX STABILITY
    FREIER, SM
    KIERZEK, R
    CARUTHERS, MH
    NEILSON, T
    TURNER, DH
    [J]. BIOCHEMISTRY, 1986, 25 (11) : 3209 - 3213
  • [9] EXPLORATION OF THE L18 BINDING-SITE ON 5S RNA BY DELETION MUTAGENESIS
    GEWIRTH, DT
    MOORE, PB
    [J]. NUCLEIC ACIDS RESEARCH, 1988, 16 (22) : 10717 - 10732
  • [10] FREE-ENERGY OF IMPERFECT NUCLEIC-ACID HELICES .2. SMALL HAIRPIN LOOPS
    GRALLA, J
    CROTHERS, DM
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1973, 73 (04) : 497 - &