Double peaks in the plasma concentration-time profile following oral administration have been reported for several compounds. A pharmacokinetic model incorporating discontinuous absorption was developed to simulate concentration-time profiles with double peaks. The gastrointestinal (GI) tract was divided into N compartments, with absorption occurring only from the second and Nth compartments. A two-compartment model was used to describe systemic drug disposition. The effect of gastric emptying and GI transit rate constants (K1 and K(t), respectively), number of hypothetical gut compartments, and absorption rate constant at each site (K(a1) K(a2)) on the time of occurrence of each peak (T(p1) Tp2), the theoretical fraction of the dose absorbed at each site (PHI-1), (PHI-2), and the contribution of the second site to systemic drug exposure (expressed as (PHI-2rel) were examined. Simulated concentration-time profiles demonstrated that T(p2) was determined by K(t) and N, while T(p1) was determined by K1 and K(t). Changes in K(a1) and K(a2) had no effect on T(p1) or T(p2). PHI-1, PHI-2, and PHI-2rel were determined by K(a1) K(a2), and K(t), and simulations indicated that a secondary peak in the concentration-time profile will be evident only when PHI-2rel is substantial. In addition, concentration-time data for ranitidine and cimetidine, which displayed double peaks, were fit with the model. The present model described both data sets well, and realistic pharmacokinetic and physiologic parameters (absorption rate constants, systemic bioavailabilities, GI residence times) were obtained.