The uptake, transformation and fate of Se, added as selenate to a mixed microbial ecosystem containing Se-tolerant bacteria and cyanobacteria, has been studied in simulated laboratory ponds. There was evidence of concerted activities of the microbial community in the system. Motile bacteria were responsible for transport into a surface mat and the combined actions of the microbial consortium provide chemical conditions under which the Se could be reduced to the elemental form and physically entrained in the mat. Strong qualitative indications of the formation of volatile alkylselenium compounds were also observed. The removal of Se from the water column was rapid and essentially quantitative. The advantages of such biological ecosystems for remediation of Se-contamined aquatic ecosystems are discussed.