SEQUENCING OF ANTISENSE DNA ANALOGS BY CAPILLARY GEL-ELECTROPHORESIS WITH LASER-INDUCED FLUORESCENCE DETECTION

被引:21
作者
BELENKY, A [1 ]
SMISEK, DL [1 ]
COHEN, AS [1 ]
机构
[1] HYBRIDON INC,WORCESTER,MA 01605
关键词
D O I
10.1016/0021-9673(94)01092-S
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
A method using capillary gel electrophoresis with laser-induced fluorescence detection is described which permits complete sequence determination of antisense DNA analogues of unknown sequence. This method, originally created as a tool to confirm the sequence of antisense oligonucleotides being developed as therapeutic drugs, utilizes data collected under a range of experimental conditions described by the Ogston model as applied to gel electrophoresis. A linear relationship independent of experimental conditions between the relative electrophoretic migration time and the oligonucleotide base number was observed and is shown to be consistent with a simplified version of this model and can be used to facilitate the sequence determination.
引用
收藏
页码:137 / 149
页数:13
相关论文
共 36 条
  • [1] ONE LABEL, ONE TUBE, SANGER DNA SEQUENCING IN ONE AND 2 LANES ON A GEL
    ANSORGE, W
    ZIMMERMANN, J
    SCHWAGER, C
    STEGEMANN, J
    ERFLE, H
    VOSS, H
    [J]. NUCLEIC ACIDS RESEARCH, 1990, 18 (11) : 3419 - 3420
  • [2] MOBILITY MODELS FOR STIFF AND FLEXIBLE MACROMOLECULES IN DILUTE GELS
    ARVANITIDOU, E
    HOAGLAND, D
    SMISEK, D
    [J]. BIOPOLYMERS, 1991, 31 (04) : 435 - 447
  • [3] QUANTITATIVE-ANALYSIS OF PHOSPHOROTHIOATE OLIGONUCLEOTIDES IN BIOLOGICAL-FLUIDS USING FAST ANION-EXCHANGE CHROMATOGRAPHY
    BOURQUE, AJ
    COHEN, AS
    [J]. JOURNAL OF CHROMATOGRAPHY-BIOMEDICAL APPLICATIONS, 1993, 617 (01): : 43 - 49
  • [4] DNA-SEQUENCING BY CAPILLARY ELECTROPHORESIS - USE OF A 2-LASER 2-WINDOW INTENSIFIED DIODE-ARRAY DETECTION SYSTEM
    CARSON, S
    COHEN, AS
    BELENKII, A
    RUIZMARTINEZ, MC
    BERKA, J
    KARGER, BL
    [J]. ANALYTICAL CHEMISTRY, 1993, 65 (22) : 3219 - 3226
  • [5] 2-LABEL PEAK-HEIGHT ENCODED DNA SEQUENCING BY CAPILLARY GEL-ELECTROPHORESIS - 3 EXAMPLES
    CHEN, DY
    HARKE, HR
    DOVICHI, NJ
    [J]. NUCLEIC ACIDS RESEARCH, 1992, 20 (18) : 4873 - 4880
  • [6] SUBATTOMOLE AMINO-ACID ANALYSIS BY CAPILLARY ZONE ELECTROPHORESIS AND LASER-INDUCED FLUORESCENCE
    CHENG, YF
    DOVICHI, NJ
    [J]. SCIENCE, 1988, 242 (4878) : 562 - 564
  • [7] RAPID SEPARATION OF DNA RESTRICTION FRAGMENTS USING CAPILLARY ELECTROPHORESIS
    COHEN, AS
    NAJARIAN, D
    SMITH, JA
    KARGER, BL
    [J]. JOURNAL OF CHROMATOGRAPHY, 1988, 458 : 323 - 333
  • [8] RAPID SEPARATION AND PURIFICATION OF OLIGONUCLEOTIDES BY HIGH-PERFORMANCE CAPILLARY GEL-ELECTROPHORESIS
    COHEN, AS
    NAJARIAN, DR
    PAULUS, A
    GUTTMAN, A
    SMITH, JA
    KARGER, BL
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (24) : 9660 - 9663
  • [9] CAPILLARY GEL-ELECTROPHORESIS OF BIOPOLYMERS
    COHEN, AS
    SMISEK, DL
    KEOHAVONG, P
    [J]. TRAC-TRENDS IN ANALYTICAL CHEMISTRY, 1993, 12 (05) : 195 - 202
  • [10] COHEN AS, 1993, J CHROMATOGR, V638, P293