A NEW TOOL FOR THE QUALITATIVE AND QUANTITATIVE-ANALYSIS OF PROTEIN SURFACES USING B-SPLINE AND DENSITY OF SURFACE NEIGHBORHOOD

被引:17
作者
COLLOCH, N
MORNON, JP
机构
[1] UNIV PARIS 06, MINERAL CRISTALLOG LAB,CNRS,URA 09,TOUR 16, 4 PL JUSSIEU, F-75252 PARIS 05, FRANCE
[2] UNIV PARIS 07, MINERAL CRISTALLOG LAB, CNRS, URA 09, F-75252 PARIS 05, FRANCE
关键词
B-spline smoothing unction; concavity; convexity; graphic display; protein surfaces; proteins;
D O I
10.1016/0263-7855(90)80053-I
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
To improve the qualitative and quantitative analysis of surfaces of protein, two new methods are proposed: one that smoothes the MS surface of Connolly with B-spline smoothing functions to highlight the significant features of the surface, and one that computes the density of surface neighborhood to allow quantitative comparison. © 1990.
引用
收藏
页码:133 / 140
页数:8
相关论文
共 54 条
  • [1] ABOLA EE, 1987, CRYSTALLOGRAPHIC DAT, P107
  • [2] 3-DIMENSIONAL STRUCTURE OF AN ANTIGEN-ANTIBODY COMPLEX AT 2.8-A RESOLUTION
    AMIT, AG
    MARIUZZA, RA
    PHILLIPS, SEV
    POLJAK, RJ
    [J]. SCIENCE, 1986, 233 (4765) : 747 - 753
  • [3] SPACE-FILLING MODELS OF KINASE CLEFTS AND CONFORMATION CHANGES
    ANDERSON, CM
    ZUCKER, FH
    STEITZ, TA
    [J]. SCIENCE, 1979, 204 (4391) : 375 - 380
  • [4] SURFACE FRACTALITY AS A GUIDE FOR STUDYING PROTEIN - PROTEIN INTERACTIONS
    AQVIST, J
    TAPIA, O
    [J]. JOURNAL OF MOLECULAR GRAPHICS, 1987, 5 (01): : 30 - &
  • [5] THE USE OF MOLECULAR-REPLACEMENT PHASES FOR THE REFINEMENT OF THE HUMAN RHINOVIRUS-14 STRUCTURE
    ARNOLD, E
    ROSSMANN, MG
    [J]. ACTA CRYSTALLOGRAPHICA SECTION A, 1988, 44 : 270 - 282
  • [6] MOLECULAR FRACTAL SURFACES
    AVNIR, D
    FARIN, D
    PFEIFER, P
    [J]. NATURE, 1984, 308 (5956) : 261 - 263
  • [8] PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES
    BERNSTEIN, FC
    KOETZLE, TF
    WILLIAMS, GJB
    MEYER, EF
    BRICE, MD
    RODGERS, JR
    KENNARD, O
    SHIMANOUCHI, T
    TASUMI, M
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) : 535 - 542
  • [9] Bezier P, 1972, NUMERICAL CONTROL MA
  • [10] EXAMPLE OF AN EXISTING SYSTEM IN MOTOR INDUSTRY - UNISURF SYSTEM
    BEZIER, PE
    [J]. PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES A-MATHEMATICAL AND PHYSICAL SCIENCES, 1971, 321 (1545): : 207 - &