CHARACTERIZATION OF THE BIOCHEMICAL-PROPERTIES OF RECOMBINANT RIBONUCLEASE-III

An Escherichla coll double strand specific endoribonuclease, RNase III, was cloned, expressed in large amounts, and purified to homogeneity. Enzyme activity was monitored by assaying fractions for the ability to correctly process exogenous RNA ontaining specific RNase III cleavage sites. DEAE-Sepharose ion exchange chromatography in the presence of a linear KCI gradient (from 0.02 M to 0.75 M) demonstrated that RNase III exists as two distinct forms. One form elutes at a KCI concentration of 0.13 M and the other elutes at 0.33 M. The presence of stoichiometric amounts of the GTP-binding protein Era during purification results in the conversion of the low salt form into the high salt form. Size exclusion chromatography demonstrated that both forms exist as a dlmer in solution. In order to investigate the nature of the dimer, protein cross-linking was performed and cross-linked products were detected by silver staining. The protein-protein dimer can be visualized at proteln:cross-linker molar ratios as low as 1:15 within 1 minute of exposure to cross-linker in 0.1 M KCI. Upon addition of substrate RNA to the cross-linking reaction a second form of the protein-protein dimer (with a slightly smaller apparent molecular weight) becomes prominent. Induction of the new form is absolutely dependent upon the addition of substrate mRNA to the reaction mixture. We postulate that the RNase III dimer undergoes a dramatic conformational change upon recognition of RNA which we are able to trap by crosslinking. © 1990 Oxford University Press.