MODELING AMINO-ACID SIDE-CHAINS .1. DETERMINATION OF NET ATOMIC CHARGES FROM ABINITIO SELF-CONSISTENT-FIELD MOLECULAR ELECTROSTATIC PROPERTIES

被引:91
作者
CHIPOT, C
MAIGRET, B
RIVAIL, JL
SCHERAGA, HA
机构
[1] UNIV NANCY 1,CNRS,URA 510,CHIM THEOR LAB,BP 239,F-54506 VANDOEUVRE NANCY,FRANCE
[2] CORNELL UNIV,BAKER LAB CHEM,ITHACA,NY 14853
关键词
D O I
10.1021/j100204a034
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A comprehensive study of the naturally occurring amino acid side chains is presented. This includes a full ab initio SCF geometry optimization of each structure, using the 6-31G** split-valence basis set, and the derivation of net atomic charges from the molecular electrostatic field and potential. The fitting procedure is analyzed critically, and the grid sensitivity is suppressed by avoiding the effects of electron cloud penetration. Charges obtained from the fits reproduced the SCF dipole moments reliably, with no significant errors. However, in some specific cases, the inclusion of fictitious atom charges appeared to be necessary.
引用
收藏
页码:10276 / 10284
页数:9
相关论文
共 44 条
[1]   ABINITIO FORCE-FIELD FOR SIMULATIONS OF PROTEINS AND NUCLEIC-ACIDS [J].
AIDA, M ;
CORONGIU, G ;
CLEMENTI, E .
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 1992, 42 (05) :1353-1381
[2]  
[Anonymous], 1986, AB INITIO MOL ORBITA
[3]  
Berendsen HJC, 1981, INTERMOLECULAR FORCE, P331, DOI [DOI 10.1007/978-94-015-7658-1_21, 10.1007/978-94-015-7658-1_21]
[4]   A theory of water and ionic solution, with particular reference to hydrogen and hydroxyl ions [J].
Bernal, JD ;
Fowler, RH .
JOURNAL OF CHEMICAL PHYSICS, 1933, 1 (08) :515-548
[5]   ATOMIC CHARGES DERIVED FROM SEMIEMPIRICAL METHODS [J].
BESLER, BH ;
MERZ, KM ;
KOLLMAN, PA .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1990, 11 (04) :431-439
[6]   DETERMINING ATOM-CENTERED MONOPOLES FROM MOLECULAR ELECTROSTATIC POTENTIALS - THE NEED FOR HIGH SAMPLING DENSITY IN FORMAMIDE CONFORMATIONAL-ANALYSIS [J].
BRENEMAN, CM ;
WIBERG, KB .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1990, 11 (03) :361-373
[7]   CHARMM - A PROGRAM FOR MACROMOLECULAR ENERGY, MINIMIZATION, AND DYNAMICS CALCULATIONS [J].
BROOKS, BR ;
BRUCCOLERI, RE ;
OLAFSON, BD ;
STATES, DJ ;
SWAMINATHAN, S ;
KARPLUS, M .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1983, 4 (02) :187-217
[8]   EFFICIENT AND ACCURATE CALCULATION OF ANION PROTON AFFINITIES [J].
CHANDRASEKHAR, J ;
ANDRADE, JG ;
SCHLEYER, PV .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1981, 103 (18) :5609-5612
[9]   ATOMIC CHARGES DERIVED FROM ELECTROSTATIC POTENTIALS - A DETAILED STUDY [J].
CHIRLIAN, LE ;
FRANCL, MM .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1987, 8 (06) :894-905
[10]   MODELING THE ELECTRIC-FIELD OF WATER OBTAINED FROM ACCURATE SCF WAVE-FUNCTIONS [J].
COLONNA, F ;
ANGYAN, JG ;
TAPIA, O .
CHEMICAL PHYSICS LETTERS, 1990, 172 (01) :55-61