PROCHECK - A PROGRAM TO CHECK THE STEREOCHEMICAL QUALITY OF PROTEIN STRUCTURES

被引：21760

作者：

LASKOWSKI, RA ^{[1
]}

MACARTHUR, MW ^{[1
]}

MOSS, DS ^{[1
]}

THORNTON, JM ^{[1
]}

机构：

[1] UNIV LONDON BIRKBECK COLL,DEPT CRYSTALLOG,LONDON WC1E 7HX,ENGLAND

来源：

JOURNAL OF APPLIED CRYSTALLOGRAPHY | 1993年 / 26卷

关键词：

D O I：

10.1107/S0021889892009944

中图分类号：

O6 [化学];

学科分类号：

0703 ;

摘要：

The PROCHECK suite of programs provides a detailed check on the stereochemistry of a protein structure. Its outputs comprise a number of plots in PostScript format and a comprehensive residue-by-residue listing. These give an assessment of the overall quality of the structure as compared with well refined structures of the same resolution and also highlight regions that may need further investigation. The PROCHECK programs are useful for assessing the quality not only of protein structures in the process of being solved but also of existing structures and of those being modelled on known structures.

引用

页码：283 / 291

页数：9

共 22 条

[1] CAMBRIDGE CRYSTALLOGRAPHIC DATA CENTER - COMPUTER-BASED SEARCH, RETRIEVAL, ANALYSIS AND DISPLAY OF INFORMATION [J].

ALLEN, FH ;

BELLARD, S ;

BRICE, MD ;

CARTWRIGHT, BA ;

DOUBLEDAY, A ;

HIGGS, H ;

HUMMELINK, T ;

HUMMELINKPETERS, BG ;

KENNARD, O ;

MOTHERWELL, WDS ;

RODGERS, JR ;

WATSON, DG .

ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1979, 35 (OCT) :2331-2339

[2] PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].

BERNSTEIN, FC ;

KOETZLE, TF ;

WILLIAMS, GJB ;

MEYER, EF ;

BRICE, MD ;

RODGERS, JR ;

KENNARD, O ;

SHIMANOUCHI, T ;

TASUMI, M .

JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542

[3] 18TH KREBS,HANS LECTURE - KNOWLEDGE-BASED PROTEIN MODELING AND DESIGN [J].

BLUNDELL, T ;

CARNEY, D ;

GARDNER, S ;

HAYES, F ;

HOWLIN, B ;

HUBBARD, T ;

OVERINGTON, J ;

SINGH, DA ;

SIBANDA, BL ;

SUTCLIFFE, M .

EUROPEAN JOURNAL OF BIOCHEMISTRY, 1988, 172 (03) :513-520

[4] BETWEEN OBJECTIVITY AND SUBJECTIVITY [J].

BRANDEN, CI ;

JONES, TA .

NATURE, 1990, 343 (6260) :687-689

[5] FREE R-VALUE - A NOVEL STATISTICAL QUANTITY FOR ASSESSING THE ACCURACY OF CRYSTAL-STRUCTURES [J].

BRUNGER, AT .

NATURE, 1992, 355 (6359) :472-475

[6]

Brunger AT, 1988, CRYSTALLOGRAPHIC COM, V3, P126

[7] ESTIMATION OF THE MEAN ERROR IN ATOMIC POSITIONS FROM THE OVERALL VALUES OF R-INDEXES [J].

ELANGO, N ;

PARTHASARATHY, S .

ACTA CRYSTALLOGRAPHICA SECTION A, 1990, 46 :495-502

[8] ACCURATE BOND AND ANGLE PARAMETERS FOR X-RAY PROTEIN-STRUCTURE REFINEMENT [J].

ENGH, RA ;

HUBER, R .

ACTA CRYSTALLOGRAPHICA SECTION A, 1991, 47 :392-400

[9] COMPARISON OF SOLVENT-INACCESSIBLE CORES OF HOMOLOGOUS PROTEINS - DEFINITIONS USEFUL FOR PROTEIN MODELING [J].

HUBBARD, TJP ;

BLUNDELL, TL .

PROTEIN ENGINEERING, 1987, 1 (03) :159-171

[10]

ISLAM SA, 1990, ACCURACY RELIABILITY, P53

← 1 2 3 →