A METHOD FOR PROBING THE TOPOGRAPHY AND INTERACTIONS OF PROTEINS - FOOTPRINTING OF MYOGLOBIN

被引:28
作者
ZHONG, M [1 ]
LIN, L [1 ]
KALLENBACH, NR [1 ]
机构
[1] NYU,DEPT CHEM,NEW YORK,NY 10003
关键词
PROTEIN-PROTEIN INTERACTION; SURFACE MAPPING;
D O I
10.1073/pnas.92.6.2111
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We describe a procedure for mapping residues on the surface of a protein molecule to its sequence, using a scheme that is analogous to nucleic acid footprinting. The protein is end labeled radioactively and subjected to limited proteolysis, and the products are analyzed by denaturing polyacrylamide gel electrophoresis and autoradiography. The method is tested with the heme protein myoglobin and applied to mapping the (unknown) surface of the molecule lacking the heme group: apomyoglobin. Sites of protein-protein interaction can be identified, as illustrated by footprinting the association between myoglobin and an anti-myoglobin monoclonal antibody.
引用
收藏
页码:2111 / 2115
页数:5
相关论文
共 38 条
[1]   MOLECULAR MECHANISMS OF ACID DENATURATION - THE ROLE OF HISTIDINE-RESIDUES IN THE PARTIAL UNFOLDING OF APOMYOGLOBIN [J].
BARRICK, D ;
HUGHSON, FM ;
BALDWIN, RL .
JOURNAL OF MOLECULAR BIOLOGY, 1994, 237 (05) :588-601
[2]   INTRINSIC AND EXTRINSIC FACTORS IN PROTEIN ANTIGENIC STRUCTURE [J].
BERZOFSKY, JA .
SCIENCE, 1985, 229 (4717) :932-940
[3]  
BERZOFSKY JA, 1982, J BIOL CHEM, V257, P3189
[4]   INTERACTION CLONING - IDENTIFICATION OF A HELIX-LOOP-HELIX ZIPPER PROTEIN THAT INTERACTS WITH C-FOS [J].
BLANAR, MA ;
RUTTER, WJ .
SCIENCE, 1992, 256 (5059) :1014-1018
[5]  
BRESLOW E, 1965, J BIOL CHEM, V240, P304
[6]  
CARREY EA, 1989, PROTEIN STRUCTURE PR, P117
[7]   CHARACTERIZATION OF HYDROPHOBIC CORES IN APOMYOGLOBIN - A PROTON NMR-SPECTROSCOPY STUDY [J].
COCCO, MJ ;
LECOMTE, JTJ .
BIOCHEMISTRY, 1990, 29 (50) :11067-11072
[8]  
COCCO MJ, 1994, PROTEIN SCI, V3, P267
[9]  
DAVIES DR, 1988, J BIOL CHEM, V263, P10541
[10]   RADIOLYTIC FOOTPRINTING - BETA-RAYS, GAMMA-PHOTONS, AND FAST-NEUTRONS PROBE DNA-PROTEIN INTERACTIONS [J].
FRANCHETBEUZIT, J ;
SPOTHEIMMAURIZOT, M ;
SABATTIER, R ;
BLAZYBAUDRAS, B ;
CHARLIER, M .
BIOCHEMISTRY, 1993, 32 (08) :2104-2110