The structures of the bases NH3, H2O, HF, PH3, H2S, HCl, and HCN and the corresponding protonated and deprotonated ions have been optimized by using second-order Møller-Plesset perturbation theory with the 6-31+G(d,p) basis Basis set superposition errors for computed protonation and deprotonation energies of NH3 were evaluated for four different basis set. Single-point calculations on all species were performed with the 6-31+G(2d,2p) basis using the following correlation methods: many-body (Møller-Plesset) perturbation theory at second (MP2), third (MP3), and fourth (MP4) order; the linearized coupled-cluster method (LCCM); the averaged coupled-pair functional (ACPF); configuration interaction with all single and double excitations (CISD); and CISD with the Davidson and the Pople corrections, all relative to a single-reference Hartree-Fock function. The MP2 values for the protonation and deprotonation energies are always the lowest, while the CISD values are often highest. The Møller-Plesset expansion appears to be converging well in general, although there is strong alternation and slow convergence for the deprotonation energies of the first-row bases NH3, H2O, and HF The various correlated results agree with each other to within about 2 kcal/mol for almost all protonation energies and within 2-7 kcal/mol for deprotonation, though the agreement is improved substantially if the MP2 results are excluded. The LCCM, ACPF, and corrected CI results agree with MP3 within about 1 kcal/mol or better for protonation and within 3 kcal/mol or better for deprotonation. The protonation and deprotonation energies computed with the various methods generally agree with experimental values to about 1%. Except for PH4+ and the C-N bond in HCNH+, protonation and deprotonation of these bases increase bond lengths. © 1990 American Chemical Society.