2.0-ANGSTROM REFINED CRYSTAL-STRUCTURE OF THE CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN-KINASE COMPLEXED WITH A PEPTIDE INHIBITOR AND DETERGENT

被引:89
作者
KNIGHTON, DR
BELL, SM
ZHENG, JH
TENEYCK, LF
XUONG, NH
TAYLOR, SS
SOWADSKI, JM
机构
[1] UNIV CALIF SAN DIEGO,DEPT MED,9500 GILMAN DR,LA JOLLA,CA 92093
[2] UNIV CALIF SAN DIEGO,DEPT BIOL,LA JOLLA,CA 92093
[3] UNIV CALIF SAN DIEGO,DEPT PHYS,LA JOLLA,CA 92093
[4] SAN DIEGO SUPERCOMP CTR,SAN DIEGO,CA 92186
[5] UNIV CALIF SAN DIEGO,DEPT CHEM,LA JOLLA,CA 92093
来源
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY | 1993年 / 49卷
关键词
D O I
10.1107/S0907444993000502
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
A mutant (Ser139Ala) of the mouse recombinant catalytic (C) subunit of cAMP-dependent protein kinase was co-crystallized with a peptide inhibitor, PKI(5-24), and MEGA-8 (octanoyl-N-methylglucamide) detergent. This structure was refined using all observed data (30 248 reflections) between 30 and 1.95 angstrom resolution to an R factor of 0.186. R.m.s. deviations of bond lengths and bond angles are 0.013 angstrom and 2.3-degrees, respectively. The final model has 3075 atoms (207 solvent) with a mean B factor of 31.9 angstrom2. The placement of invariant protein-kinase residues and most C:PKI(5-24) interactions were confirmed, but register errors affecting residues 55-64 and 309-339 were corrected during refinement by shifting the affected sequences toward the C terminus along the previously determined backbone path. New details of C:PKI(5-24) interactions and the Ser338 autophosphorylation site are described, and the acyl group binding site near the catalytic subunit NH2 terminus is identified.
引用
收藏
页码:357 / 361
页数:5
相关论文
共 27 条
[1]   PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].
BERNSTEIN, FC ;
KOETZLE, TF ;
WILLIAMS, GJB ;
MEYER, EF ;
BRICE, MD ;
RODGERS, JR ;
KENNARD, O ;
SHIMANOUCHI, T ;
TASUMI, M .
JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542
[2]   CRYSTALLOGRAPHIC R-FACTOR REFINEMENT BY MOLECULAR-DYNAMICS [J].
BRUNGER, AT ;
KURIYAN, J ;
KARPLUS, M .
SCIENCE, 1987, 235 (4787) :458-460
[3]   DIFFERENTIAL LABELING OF THE CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN-KINASE WITH A WATER-SOLUBLE CARBODIIMIDE - IDENTIFICATION OF CARBOXYL GROUPS PROTECTED BY MGATP AND INHIBITOR PEPTIDES [J].
BUECHLER, JA ;
TAYLOR, SS .
BIOCHEMISTRY, 1990, 29 (07) :1937-1943
[4]   DIFFERENTIAL LABELING OF THE CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN-KINASE WITH ACETIC-ANHYDRIDE - SUBSTRATE-INDUCED CONFORMATIONAL-CHANGES [J].
BUECHLER, JA ;
VEDVICK, TA ;
TAYLOR, SS .
BIOCHEMISTRY, 1989, 28 (07) :3018-3024
[5]   TOM - A FRODO SUBPACKAGE FOR PROTEIN-LIGAND FITTING WITH INTERACTIVE ENERGY MINIMIZATION [J].
CAMBILLAU, C ;
HORJALES, E .
JOURNAL OF MOLECULAR GRAPHICS, 1987, 5 (04) :174-&
[6]   NORMAL-TETRADECANOYL IS THE NH2-TERMINAL BLOCKING GROUP OF THE CATALYTIC SUBUNIT OF CYCLIC AMP-DEPENDENT PROTEIN-KINASE FROM BOVINE CARDIAC-MUSCLE [J].
CARR, SA ;
BIEMANN, K ;
SHOJI, S ;
PARMELEE, DC ;
TITANI, K .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1982, 79 (20) :6128-6131
[7]  
CHENG HC, 1986, BIOCHEM J, V231, P655
[8]  
GIBBS CS, 1992, J BIOL CHEM, V267, P4806
[9]   CHARACTERISTICS OF A FLAT MULTIWIRE AREA DETECTOR FOR PROTEIN CRYSTALLOGRAPHY [J].
HAMLIN, R ;
CORK, C ;
HOWARD, A ;
NIELSEN, C ;
VERNON, W ;
MATTHEWS, D ;
XUONG, NH .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1981, 14 (APR) :85-93
[10]   THE PROTEIN-KINASE FAMILY - CONSERVED FEATURES AND DEDUCED PHYLOGENY OF THE CATALYTIC DOMAINS [J].
HANKS, SK ;
QUINN, AM ;
HUNTER, T .
SCIENCE, 1988, 241 (4861) :42-52