INTERMOLECULAR INTERACTIONS AROUND FUNCTIONAL-GROUPS IN CRYSTALS - DATA FOR MODELING THE BINDING OF DRUGS TO BIOLOGICAL MACROMOLECULES

被引:49
作者
GLUSKER, JP
机构
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 1995年 / 51卷
关键词
D O I
10.1107/S0907444995003313
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
When a small biologically active molecule enters the body it has the possibility of interacting with one or many of the large variety of macromolecules that are present. This interaction involves a unique complementary fit between the two that depends not only on the shape, but also on the distribution of charges on the surfaces of both [Fischer (1894). Ber. Dtsch. Chem. Ges. 27, 2984-2993]. This recognition between two molecules may elicit a biological response and such processes are the subject of biochemical investigations. The question asked here is: what geometrical information on distances and relative orientations of interacting non-bonded functional groups can be found from X-ray crystallographic investigations?
引用
收藏
页码:418 / 427
页数:10
相关论文
共 72 条
[1]   CAMBRIDGE CRYSTALLOGRAPHIC DATA CENTER - COMPUTER-BASED SEARCH, RETRIEVAL, ANALYSIS AND DISPLAY OF INFORMATION [J].
ALLEN, FH ;
BELLARD, S ;
BRICE, MD ;
CARTWRIGHT, BA ;
DOUBLEDAY, A ;
HIGGS, H ;
HUMMELINK, T ;
HUMMELINKPETERS, BG ;
KENNARD, O ;
MOTHERWELL, WDS ;
RODGERS, JR ;
WATSON, DG .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1979, 35 (OCT) :2331-2339
[2]   MOLECULAR MECHANICS - THE MM3 FORCE-FIELD FOR HYDROCARBONS .1. [J].
ALLINGER, NL ;
YUH, YH ;
LII, JH .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1989, 111 (23) :8551-8566
[3]  
ALLINGER NL, 1982, ACS MONOGRAPH, V177
[4]  
[Anonymous], 1894, BER DTSCH CHEM GES
[5]   HYDROGEN-BONDING IN GLOBULAR-PROTEINS [J].
BAKER, EN ;
HUBBARD, RE .
PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 1984, 44 (02) :97-179
[6]   THE INORGANIC CRYSTAL-STRUCTURE DATA-BASE [J].
BERGERHOFF, G ;
HUNDT, R ;
SIEVERS, R ;
BROWN, ID .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1983, 23 (02) :66-69
[7]   PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].
BERNSTEIN, FC ;
KOETZLE, TF ;
WILLIAMS, GJB ;
MEYER, EF ;
BRICE, MD ;
RODGERS, JR ;
KENNARD, O ;
SHIMANOUCHI, T ;
TASUMI, M .
JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542
[8]   DEFINITION AND DISPLAY OF STERIC, HYDROPHOBIC, AND HYDROGEN-BONDING PROPERTIES OF LIGAND-BINDING SITES IN PROTEINS USING LEE AND RICHARDS ACCESSIBLE SURFACE - VALIDATION OF A HIGH-RESOLUTION GRAPHICAL TOOL FOR DRUG DESIGN [J].
BOHACEK, RS ;
MCMARTIN, C .
JOURNAL OF MEDICINAL CHEMISTRY, 1992, 35 (10) :1671-1684
[9]   LUDI - RULE-BASED AUTOMATIC DESIGN OF NEW SUBSTITUENTS FOR ENZYME-INHIBITOR LEADS [J].
BOHM, HJ .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 1992, 6 (06) :593-606
[10]   NEW HYDROGEN-BOND POTENTIALS FOR USE IN DETERMINING ENERGETICALLY FAVORABLE BINDING-SITES ON MOLECULES OF KNOWN STRUCTURE [J].
BOOBBYER, DNA ;
GOODFORD, PJ ;
MCWHINNIE, PM ;
WADE, RC .
JOURNAL OF MEDICINAL CHEMISTRY, 1989, 32 (05) :1083-1094