THE 2 ANGSTROM CRYSTAL-STRUCTURE OF SUBTILISIN-E WITH PMSF INHIBITOR

被引:12
作者
CHU, NM [1 ]
CHAO, Y [1 ]
BI, RC [1 ]
机构
[1] ACAD SINICA,INST BIOPHYS,DEPT PROT ENGN,BEIJING 100101,PEOPLES R CHINA
来源
PROTEIN ENGINEERING | 1995年 / 8卷 / 03期
关键词
CALCIUM-BINDING SITE; CRYSTAL STRUCTURE; MUTANT; PMSF BINDING; SUBTILISIN E;
D O I
10.1093/protein/8.3.211
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Using enzyme prepared by the DNA recombination technique, subtilisin E from Bacillus subtilis was crystallized in space group P2(1)2(1)2(1) with two molecules in an asymmetric unit. The crystal structure of PMSF-inhibited subtilisin E was solved by molecular replacement followed by refinement with the X-PLOR program. This resulted in the 2.0 Angstrom structure of subtilisin E with an R-factor of 0.191 for 8-2 Angstrom data and r.m.s. deviations from ideal values of 0.021 Angstrom and 2.294 degrees for bond lengths and bond angles respectively. The PMSF group covalently bound to Ser221 appeared very clearly in the electron density map. Except for the active site disturbed by PMSF binding, the structural features of subtilisin E are almost the same as in other subtilisins. The calcium-binding sites are different in detail in the two independent molecules of subtilisin E. Based on the structure, the remarkably enhanced heat stability of mutant N118S of subtilisin E is discussed. It is very likely that there is an additional water molecule in the mutant structure, which is hydrogen bonded to side chains of Ser118 and its neighbouring residues Lys27 and Asp120.
引用
收藏
页码:211 / 215
页数:5
相关论文
共 23 条
[1]   3-DIMENSIONAL STRUCTURE OF PROTEINASE-K AT 0.15-NM RESOLUTION [J].
BETZEL, C ;
PAL, GP ;
SAENGER, W .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1988, 178 (01) :155-171
[2]  
BI RC, 1983, ACTA CRYSTALLOGR B, V39, P90
[3]   THE HIGH-RESOLUTION X-RAY CRYSTAL-STRUCTURE OF THE COMPLEX FORMED BETWEEN SUBTILISIN CARLSBERG AND EGLIN-C, AN ELASTASE INHIBITOR FROM THE LEECH HIRUDO-MEDICINALIS - STRUCTURAL-ANALYSIS, SUBTILISIN STRUCTURE AND INTERFACE GEOMETRY .2. [J].
BODE, W ;
PAPAMOKOS, E ;
MUSIL, D .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1987, 166 (03) :673-692
[4]  
BOTT R, 1988, J BIOL CHEM, V263, P7895
[5]   SLOW-COOLING PROTOCOLS FOR CRYSTALLOGRAPHIC REFINEMENT BY SIMULATED ANNEALING [J].
BRUNGER, AT ;
KRUKOWSKI, A ;
ERICKSON, JW .
ACTA CRYSTALLOGRAPHICA SECTION A, 1990, 46 :585-593
[6]   CRYSTALLOGRAPHIC R-FACTOR REFINEMENT BY MOLECULAR-DYNAMICS [J].
BRUNGER, AT ;
KURIYAN, J ;
KARPLUS, M .
SCIENCE, 1987, 235 (4787) :458-460
[7]   ENZYME ENGINEERING FOR NONAQUEOUS SOLVENTS - RANDOM MUTAGENESIS TO ENHANCE ACTIVITY OF SUBTILISIN-E IN POLAR ORGANIC MEDIA [J].
CHEN, KQ ;
ARNOLD, FH .
BIO-TECHNOLOGY, 1991, 9 (11) :1073-1077
[8]  
Crowther R. A., 1972, MOL REPLACEMENT METH, P173
[9]   3-DIMENSIONAL STRUCTURE AND ITS COMPARISON WITH SUBTILISIN BPN [J].
DRENTH, J ;
HOL, WGJ ;
JANSONIUS, JN ;
KOEKOEK, R .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1972, 26 (02) :177-+
[10]   MERLOT, AN INTEGRATED PACKAGE OF COMPUTER-PROGRAMS FOR THE DETERMINATION OF CRYSTAL-STRUCTURES BY MOLECULAR REPLACEMENT [J].
FITZGERALD, PMD .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1988, 21 (03) :273-278