ON THE MAXIMUM-LIKELIHOOD METHOD IN MOLECULAR PHYLOGENETICS

被引:184
作者
HASEGAWA, M
KISHINO, H
SAITOU, N
机构
[1] GRAD UNIV ADV STUDIES,DEPT STAT SCI,MINATO KU,TOKYO 106,JAPAN
[2] UNIV TOKYO,DEPT ANTHROPOL,BUNKYO KU,TOKYO 113,JAPAN
关键词
EFFICIENCY; MAXIMUM LIKELIHOOD METHOD; METHODS FOR INFERRING TREES; DNA SEQUENCE DATA;
D O I
10.1007/BF02101285
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The efficiency of obtaining the correct tree by the maximum likelihood method (Felsenstein 1981) for inferring trees from DNA sequence data was compared with trees obtained by distance methods. It was shown that the maximum likelihood method is superior to distance methods in the efficiency particularly when the evolutionary rate differs among lineages.
引用
收藏
页码:443 / 445
页数:3
相关论文
共 9 条
[1]   CASES IN WHICH PARSIMONY OR COMPATIBILITY METHODS WILL BE POSITIVELY MISLEADING [J].
FELSENSTEIN, J .
SYSTEMATIC ZOOLOGY, 1978, 27 (04) :401-410
[2]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376
[3]   ROBUSTNESS OF MAXIMUM-LIKELIHOOD TREE ESTIMATION AGAINST DIFFERENT PATTERNS OF BASE SUBSTITUTIONS [J].
FUKAMIKOBAYASHI, K ;
TATENO, Y .
JOURNAL OF MOLECULAR EVOLUTION, 1991, 32 (01) :79-91
[4]  
Hasegawa M., 1984, B BIOMET SOC JPN, V5, P1
[5]  
Jukes TH., 1969, MAMMALIAN PROTEIN ME, P21, DOI [10.1016/B978-1-4832-3211-9.50009-7, DOI 10.1093/BIOINFORMATICS/BTM404]
[6]  
SAITOU N, 1989, MOL BIOL EVOL, V6, P514
[7]   THE NEIGHBOR-JOINING METHOD - A NEW METHOD FOR RECONSTRUCTING PHYLOGENETIC TREES [J].
SAITOU, N ;
NEI, M .
MOLECULAR BIOLOGY AND EVOLUTION, 1987, 4 (04) :406-425
[8]   PROPERTY AND EFFICIENCY OF THE MAXIMUM-LIKELIHOOD METHOD FOR MOLECULAR PHYLOGENY [J].
SAITOU, N .
JOURNAL OF MOLECULAR EVOLUTION, 1988, 27 (03) :261-273
[9]  
SOURDIS J, 1988, MOL BIOL EVOL, V5, P298