This chapter discusses the expression of the transfected complementary DNA (cDNA), the intracellular localization of the recombinant photoprotein, the reconstitution of the active, Ca2+ measuring holoprotein, the measurement of aequorin light emission, and the conversion of luminescence data into estimates of [Ca2+]. It describes the development of a new methodology for measuring [Ca2+]m in living cells. By this approach the chapter demonstrates that the in vivo local domains of [Ca2+]c, sufficiently high to induce fast mitochondrial Ca2+ accumulation, are transiently generated close to plasmalemmal or intracellular Ca2+ channels. Two appealing applications appear to be an important goal for the future: single-cell imaging and the generation of transgenic animals. As to the first, the low-light emission of photoprotein represents a major problem, and work needs to be done, both in the development of suitable apparatus designed for low-light imaging and in the enhancement of the levels of aequorin expression. As to transgenic animals, there is the fascinating possibility of studying mitochondrial Ca2+ homeostasis in situ (e.g., in brain slices). © 1995, Elsevier Inc.