A PCR-BASED LINKAGE MAP OF HUMAN CHROMOSOME-1

被引:50
作者
ENGELSTEIN, M
HUDSON, TJ
LANE, JM
LEE, MK
LEVERONE, B
LANDES, GM
PELTONEN, L
WEBER, JL
DRACOPOLI, NC
机构
[1] MIT,DEPT BIOL,CTR GENOME RES,E17-121,CAMBRIDGE,MA 02139
[2] NATL PUBL HLTH INST,SF-00280 HELSINKI 28,FINLAND
[3] INTEGRAT GENET INC,DEPT HUMAN GENET,FRAMINGHAM,MA 01701
[4] MARSHFIELD CLIN FDN MED RES & EDUC,MARSHFIELD,WI 54449
关键词
D O I
10.1006/geno.1993.1054
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
A genetic linkage map of human chromosome 1 based entirely on PCR-typable markers has been developed using 38 simple sequence repeat (SSR) polymorphisms. These SSRs include 36 dinucleotide repeats and 2 tetranucleotide repeats. The average heterozygosity at these markers was 0.73 and ranged from 0.52 to 0.95. Multipoint linkage analysis was used to develop a map of these 38 markers in which the relative placement of each locus is supported by likelihood odds =1000:1. This PCR-based map was anchored at the centromere by the D1Z5 α-satellite polymorphism, and the ends of the map were defined by D1Z2 and D1S68, which are the most distal loci in the CEPH consortium map of chromosome 1. The sex-averaged, male, and female maps extend for 328, 273, and 409 cM, respectively. The average distance between markers on the sex-averaged map is 8 cM, and the largest interval is 32 cM. This map of highly informative PCR-based markers will provide a rapid means of screening human chromosome 1 for the presence of disease genes. © 1993 Academic Press. All rights reserved.
引用
收藏
页码:251 / 258
页数:8
相关论文
共 35 条
[1]   A (CA)(N) REPEAT POLYMORPHISM FOR THE HUMAN SKELETAL-MUSCLE ALPHA-ACTININ GENE-ACTN2 AND ITS LOCALIZATION ON THE LINKAGE MAP OF CHROMOSOME-1 [J].
BEGGS, AH ;
PHILLIPS, HA ;
KOZMAN, H ;
MULLEY, JC ;
WILTON, SD ;
KUNKEL, LM ;
LAING, NG .
GENOMICS, 1992, 13 (04) :1314-1315
[2]  
Bowcock Anne, 1992, Human Molecular Genetics, V1, P138, DOI 10.1093/hmg/1.2.138
[3]  
BUETOW KH, 1991, AM J HUM GENET, V49, P985
[4]   A HYPERVARIABLE REPEATED SEQUENCE ON HUMAN CHROMOSOME-1P36 [J].
BUROKER, N ;
BESTWICK, R ;
HAIGHT, G ;
MAGENIS, RE ;
LITT, M .
HUMAN GENETICS, 1987, 77 (02) :175-181
[5]   LINKAGE MAPPING OF HUMAN CHROMOSOME-10 MICROSATELLITE POLYMORPHISMS [J].
DECKER, RA ;
MOORE, J ;
PONDER, B ;
WEBER, JL .
GENOMICS, 1992, 12 (03) :604-606
[6]  
DIETRICH W, 1992, GENETICS, V131, P423
[7]   A GENETIC-LINKAGE MAP OF THE HUMAN GENOME [J].
DONISKELLER, H ;
GREEN, P ;
HELMS, C ;
CARTINHOUR, S ;
WEIFFENBACH, B ;
STEPHENS, K ;
KEITH, TP ;
BOWDEN, DW ;
SMITH, DR ;
LANDER, ES ;
BOTSTEIN, D ;
AKOTS, G ;
REDIKER, KS ;
GRAVIUS, T ;
BROWN, VA ;
RISING, MB ;
PARKER, C ;
POWERS, JA ;
WATT, DE ;
KAUFFMAN, ER ;
BRICKER, A ;
PHIPPS, P ;
MULLERKAHLE, H ;
FULTON, TR ;
NG, S ;
SCHUMM, JW ;
BRAMAN, JC ;
KNOWLTON, RG ;
BARKER, DF ;
CROOKS, SM ;
LINCOLN, SE ;
DALY, MJ ;
ABRAHAMSON, J .
CELL, 1987, 51 (02) :319-337
[8]   THE CEPH1 CONSORTIUM LINKAGE MAP OF HUMAN CHROMOSOME-1 [J].
DRACOPOLI, NC ;
OCONNELL, P ;
ELSNER, TI ;
LALOUEL, JM ;
WHITE, RL ;
BUETOW, KH ;
NISHIMURA, DY ;
MURRAY, JC ;
HELMS, C ;
MISHRA, SK ;
DONISKELLER, H ;
HALL, JM ;
LEE, MK ;
KING, MC ;
ATTWOOD, J ;
MORTON, NE ;
ROBSON, EB ;
MAHTANI, M ;
WILLARD, HF ;
ROYLE, NJ ;
PATEL, I ;
JEFFREYS, AJ ;
VERGA, V ;
JENKINS, T ;
WEBER, JL ;
MITCHELL, AL ;
BALE, AE .
GENOMICS, 1991, 9 (04) :686-700
[9]   MAPPING THE HUMAN AMYLASE GENE-CLUSTER ON THE PROXIMAL SHORT ARM OF CHROMOSOME-1 USING A HIGHLY INFORMATIVE (CA)N REPEAT [J].
DRACOPOLI, NC ;
MEISLER, MH .
GENOMICS, 1990, 7 (01) :97-102
[10]  
DRACOPOLI NC, 1988, AM J HUM GENET, V43, P462