THE ELASTIC RESILIENCE OF DNA CAN INDUCE ALL-OR-NONE STRUCTURAL TRANSITIONS IN THE NUCLEOSOME CORE PARTICLE

被引:43
作者
MARKY, NL
MANNING, GS
机构
[1] Department of Chemistry, Rutgers, The State University of New Jersey, New Brunswick, New Jersey
关键词
D O I
10.1002/bip.360311310
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
DNA on the surface of the histone octamer in the native nucleosome core particle is modeled as a circumferentially wound elastic line on the surface of a cylinder. In a model for the radial transition, the line is allowed to straighten, and thus lose energy, by swinging off the surface, but it is impeded in such an excursion by a radial force field representing the attractive interaction between DNA and histone octamer. In a model for the axial transition, the line may straighten by becoming more parallel to a generator of the cylinder while remaining on the surface. In this mode of straightening, dimer-tetramer or tetramer-tetramer interfaces are disrupted, and the resulting energy gain impedes the transition. Both radial and axial transitions are predicted to occur in all-or-none fashion. We propose that these models are related to the abrupt transitions actually observed in the nucleosome core particle.
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页码:1543 / 1557
页数:15
相关论文
共 23 条
[1]   SUPERCOILING ENERGY AND NUCLEOSOME FORMATION - ROLE OF ARGININE-RICH HISTONE KERNEL [J].
CAMERINIOTERO, RD ;
FELSENFELD, G .
NUCLEIC ACIDS RESEARCH, 1977, 4 (05) :1159-1181
[2]   EFFECTS OF DNA SUPERCOILING ON THE TOPOLOGICAL PROPERTIES OF NUCLEOSOMES [J].
GARNER, MM ;
FELSENFELD, G ;
ODEA, MH ;
GELLERT, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1987, 84 (09) :2620-2623
[3]   FLEXIBILITY OF NATIVE DNA FROM SEDIMENTATION BEHAVIOR AS A FUNCTION OF MOLECULAR WEIGHT AND TEMPERATURE [J].
GRAY, HB ;
HEARST, JE .
JOURNAL OF MOLECULAR BIOLOGY, 1968, 35 (01) :111-&
[5]   INSTABILITY OF A SURFACE ELASTIC LINE ON AN UNNATURAL RAMP [J].
MANNING, GS .
QUARTERLY OF APPLIED MATHEMATICS, 1990, 48 (03) :517-525
[7]   RELAXED ELASTIC LINE ON A CURVED SURFACE [J].
MANNING, GS .
QUARTERLY OF APPLIED MATHEMATICS, 1987, 45 (03) :515-527
[8]   ELASTIC LINE DEFORMED ON A SURFACE BY AN EXTERNAL-FIELD - INTRINSIC FORMULATION AND PRELIMINARY APPLICATION TO NUCLEOSOME ENERGETICS [J].
MANNING, GS .
PHYSICAL REVIEW A, 1988, 38 (06) :3073-3081
[9]   THE TRAJECTORY OF A STIFF ROD IN A CURVED POTENTIAL-ENERGY TROUGH - AN INITIAL RESULT FOR SHORT NUCLEOSOMAL RODS [J].
MANNING, GS .
CELL BIOPHYSICS, 1985, 7 (03) :177-184
[10]  
MANNING GS, 1987, Q APPL MATH, V45, P808