MOLECULAR-DYNAMICS SIMULATIONS OF WATER USING A FLOATING POLYNOMIAL FORCE-FIELD AND AN INTERPOLATING ELECTROSTATIC-FIELD REPRESENTATION

被引:2
作者
CACHAU, RE
机构
关键词
MOLECULAR DYNAMICS; WATER; FLOATING POLYNOMIAL FORCE FIELD; INTERPOLATING ELECTROSTATIC FIELD REPRESENTATION;
D O I
10.1016/0301-4622(94)00043-3
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The ability to accurately describe the force field of a molecule is of great importance in spectroscopic and drug design studies. However, the fitting of accurate potential energy functions has proved to be a highly complex task. The description through a simple generic formula of all conformations of a molecule has proved to be a seldom reliable procedure, while more complex representations are increasingly difficult to fit, slower to compute, and difficult to program. In this work, alternative procedures are explored: (1) the intramolecular force fields are expanded in a floating polynomial representation; (2) a fast treatment for the non-bonded interactions is applied. The advantage of these treatments is in their ability to describe highly accurate representations of molecules in a very efficient manner. The main difficulty is a heavy trade off in computer memory usage. Some of the more frequently used force fields for water, and a first principle force field are used as a test of these techniques.
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页码:217 / 233
页数:17
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