SOLVENT-INDUCED FORCES BETWEEN SOLUTES - A TIME-RESOLVED AND SPACE-RESOLVED MOLECULAR-DYNAMICS STUDY

被引:16
作者
BRUGE, F
FORNILI, SL
PALMAVITTORELLI, MB
机构
[1] UNIV PALERMO, GNSM INFM, I-90123 PALERMO, ITALY
[2] CNR, INST INTERDISCIPLINARY APPLICAT PHYS, I-90123 PALERMO, ITALY
关键词
D O I
10.1063/1.467681
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A molecular dynamics statistical mechanical simulation study of solvent-induced forces (SIFs) acting between two fixed model solutes in a bath of 727 water molecules is reported. Simulations were run up to 500 ps on a multiprocessor system, involving 60 T800-20 transputers. Results are discussed within the statistical mechanical approach of inherent structures. It is shown that SIFs are associated with the occurrence of nonpermanent, but longer-lived statistically relevant solvent configurations promoted by solutes. Their size and sign are shown to be critically dependent on the type of solute, solute-solute distance, and mutual orientation. These features give SIFs the specificity. character crucially required for functional interactions and for functional conformation and dynamics of biomolecules.
引用
收藏
页码:2407 / 2420
页数:14
相关论文
共 78 条
[1]   THE STABILIZATION OF PROTEINS BY OSMOLYTES [J].
ARAKAWA, T ;
TIMASHEFF, SN .
BIOPHYSICAL JOURNAL, 1985, 47 (03) :411-414
[2]  
Ben-Naim A., 1980, HYDROPHOBIC INTERACT
[3]  
BENNAIM A, 1990, J CHEM PHYS, V93, P8198
[4]  
BENNAIM A, 1993, C P SERIES ITALIAN P, V43, P245
[5]  
BERENDSEN HJC, 1975, WATER COMPREHENSIVE, V5, P293
[6]   A DISTRIBUTED DYNAMIC LOAD BALANCER AND ITS IMPLEMENTATION ON MULTITRANSPUTER SYSTEMS FOR MOLECULAR-DYNAMICS SIMULATION [J].
BRUGE, F ;
FORNILI, SL .
COMPUTER PHYSICS COMMUNICATIONS, 1990, 60 (01) :39-45
[7]   CONCURRENT MOLECULAR-DYNAMICS SIMULATION OF SPINODAL PHASE-TRANSITION ON TRANSPUTER ARRAYS [J].
BRUGE, F ;
FORNILI, SL .
COMPUTER PHYSICS COMMUNICATIONS, 1990, 60 (01) :31-38
[8]   SYSTOLIC CALCULATION OF PAIR INTERACTIONS USING THE CELL LINKED-LISTS METHOD ON MULTIPROCESSOR SYSTEMS [J].
BRUGE, F .
JOURNAL OF COMPUTATIONAL PHYSICS, 1993, 104 (01) :263-266
[9]   DEMIXING AND POLYMERIZATION IN SYSTEMS OF ANISOTROPIC GLOBULAR PARTICLES - A MOLECULAR-DYNAMICS SIMULATION STUDY [J].
BRUGE, F ;
MARTORANA, V ;
FORNILI, SL ;
PALMAVITTORELLI, MB .
MAKROMOLEKULARE CHEMIE-MACROMOLECULAR SYMPOSIA, 1991, 45 :43-52
[10]  
BRUGE F, 1993, C P SER ITAL PHYS SO, V43, P71