NRSUB - A NONREDUNDANT DATA-BASE FOR THE BACILLUS-SUBTILIS GENOME

被引：19

作者：

PERRIERE, G ^{[1
]}

GOUY, M ^{[1
]}

GOJOBORI, T ^{[1
]}

机构：

[1] NATL INST GENET,DNA RES CTR,MISHIMA,SHIZUOKA 411,JAPAN

来源：

NUCLEIC ACIDS RESEARCH | 1994年 / 22卷 / 25期

基金：

日本学术振兴会;

关键词：

D O I：

10.1093/nar/22.25.5525

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

We have organized the DNA sequences of Bacillus subtilis from the EMBL collection to build the NRSub data base. This data base is free from duplications and all detected overlapping sequences are merged into contigs. Data on gene mapping and codon usage are also included. NRSub is publically available through anonymous FTP in flat file format or structured on the form of an ACNUC data base. Under this format, it is possible to use NRSub with the retrieval program Query_win. This program integrates a graphical interface and may be installed on any kind of UNIX computer under X Window and on which the Vibrant and Motif libraries are available.

引用

页码：5525 / 5529

页数：5

共 25 条

[1] VARIATIONS AND CODING FEATURES OF THE SEQUENCE SPANNING THE REPLICATION TERMINUS OF BACILLUS-SUBTILIS 168 AND W23-CHROMOSOMES [J].

AHN, KS ;

WAKE, RG .

GENE, 1991, 98 (01) :107-112

[2] BASIC LOCAL ALIGNMENT SEARCH TOOL [J].

ALTSCHUL, SF ;

GISH, W ;

MILLER, W ;

MYERS, EW ;

LIPMAN, DJ .

JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410

[3] CODON PREFERENCES IN FREE-LIVING MICROORGANISMS [J].

ANDERSSON, SGE ;

KURLAND, CG .

MICROBIOLOGICAL REVIEWS, 1990, 54 (02) :198-210

[4]

BAIROCH A, 1994, NUCLEIC ACIDS RES, V22, P3578

[5] GENBANK [J].

BENSON, DA ;

BOGUSKI, M ;

LIPMAN, DJ ;

OSTELL, J .

NUCLEIC ACIDS RESEARCH, 1994, 22 (17) :3441-3444

[6]

DESSEN P, 1990, COMPUT APPL BIOSCI, V6, P355

[7] HOVERGEN - A DATABASE OF HOMOLOGOUS VERTEBRATE GENES [J].

DURET, L ;

MOUCHIROUD, D ;

GOUY, M .

NUCLEIC ACIDS RESEARCH, 1994, 22 (12) :2360-2365

[8] THE EUROPEAN-BIOINFORMATICS-INSTITUTE (EBI) DATABASES [J].

EMMERT, DB ;

STOEHR, PJ ;

STOESSER, G ;

CAMERON, GN .

NUCLEIC ACIDS RESEARCH, 1994, 22 (17) :3445-3449

[9]

GEORGE DG, 1994, NUCLEIC ACIDS RES, V22, P3569

[10]

GOUY M, 1985, COMPUT APPL BIOSCI, V1, P167

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