EMPIRICAL ENERGY FUNCTIONS FOR ENERGY MINIMIZATION AND DYNAMICS OF NUCLEIC-ACIDS

被引:258
作者
NILSSON, L [1 ]
KARPLUS, M [1 ]
机构
[1] HARVARD UNIV, DEPT CHEM, CAMBRIDGE, MA 02138 USA
关键词
D O I
10.1002/jcc.540070502
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
引用
收藏
页码:591 / 616
页数:26
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共 55 条
[1]   CONFORMATIONAL-ANALYSIS OF SUGAR RING IN NUCLEOSIDES AND NUCLEOTIDES - NEW DESCRIPTION USING CONCEPT OF PSEUDOROTATION [J].
ALTONA, C ;
SUNDARALINGAM, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1972, 94 (23) :8205-+
[2]  
ARNOTT S, 1975, HDB BIOCH MOL BIOL, P419
[3]  
BROOKS BC, UNPUB
[4]   CHARMM - A PROGRAM FOR MACROMOLECULAR ENERGY, MINIMIZATION, AND DYNAMICS CALCULATIONS [J].
BROOKS, BR ;
BRUCCOLERI, RE ;
OLAFSON, BD ;
STATES, DJ ;
SWAMINATHAN, S ;
KARPLUS, M .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1983, 4 (02) :187-217
[5]   CONFORMATIONAL GEOMETRY AND VIBRATIONAL FREQUENCIES OF NUCLEIC-ACID CHAINS [J].
BROWN, EB ;
PETICOLAS, WL .
BIOPOLYMERS, 1975, 14 (06) :1259-1271
[6]   GENERAL DEFINITION OF RING PUCKERING COORDINATES [J].
CREMER, D ;
POPLE, JA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1975, 97 (06) :1354-1358
[7]   A REFINEMENT OF THE CRYSTAL STRUCTURE OF DIKETOPIPERAZINE (2,5-PIPERAZINEDIONE) [J].
DEGEILH, R ;
MARSH, RE .
ACTA CRYSTALLOGRAPHICA, 1959, 12 (12) :1007-1014
[8]   NORMAL VIBRATIONS OF TETRAHYDROFURAN AND ITS DEUTERATED DERIVATIVES [J].
EYSTER, JM ;
PROHOFSKY, EW .
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 1974, A 30 (11) :2041-2046
[9]   SIDE-CHAIN TORSIONAL POTENTIALS - EFFECT OF DIPEPTIDE, PROTEIN, AND SOLVENT ENVIRONMENT [J].
GELIN, BR ;
KARPLUS, M .
BIOCHEMISTRY, 1979, 18 (07) :1256-1268
[10]  
GORENSTEIN DG, 1977, BIOCHIM BIOPHYS ACTA, V475, P184, DOI 10.1016/0005-2787(77)90353-7