3-DIMENSIONAL STRUCTURES OF CHIMERIC ENZYMES BETWEEN BACILLUS-SUBTILIS AND THERMUS-THERMOPHILUS 3-ISOPROPYLMALATE DEHYDROGENASES

被引:25
作者
ONODERA, K
SAKURAI, M
MORIYAMA, H
TANAKA, N
NUMATA, K
OSHIMA, T
SATO, M
KATSUBE, Y
机构
[1] OSAKA UNIV,INST PROT RES,SUITA,OSAKA 565,JAPAN
[2] TOKYO INST TECHNOL,FAC BIOSCI & BIOTECHNOL,DEPT LIFE SCI,MIDORI KU,YOKOHAMA,KANAGAWA 227,JAPAN
来源
PROTEIN ENGINEERING | 1994年 / 7卷 / 04期
基金
日本学术振兴会;
关键词
CHIMERIC ENZYME; DEHYDROGENASE; THERMOSTABILITY; X-RAY CRYSTALLOGRAPHY;
D O I
10.1093/protein/7.4.453
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The 3-D structures of two chimeric enzymes (4M6T and 2T2M6T) between the Bacillus subtilis and Thermus thermophilus 3-isopropylmalate dehydrogenases were analysed by X-ray diffraction in order to investigate their different thermostabilities. The structure of 2T2M6T was determined by the difference Fourier method and that of 4M6T by rigid body refinement, as based on the structure of the T.thermophilus enzyme. These structures were refined stereochemically to an R-factor of 0.193 at 2.5 Angstrom resolution for 4M6T and to an R-factor of 0.195 at 2.2 Angstrom resolution for 2T2M6T. The 3-D structures of 4M6T and 2T2M6T were very close to the structure of the T.thermophilus enzyme, conspicuous differences being at the molecular surface. In particular, 2T2M6T having a larger reduction in thermostability was more closely related to the T.thermophilus enzyme. However, their correlations between C-alpha-atom displacements and the root squares of the temperature factors were significantly different from each other.
引用
收藏
页码:453 / 459
页数:7
相关论文
共 22 条
[1]  
ALBER T, 1987, PROTEIN ENG, P289
[2]   CRYSTALLOGRAPHIC REFINEMENT BY SIMULATED ANNEALING - APPLICATION TO CRAMBIN [J].
BRUNGER, AT ;
KARPLUS, M ;
PETSKO, GA .
ACTA CRYSTALLOGRAPHICA SECTION A, 1989, 45 :50-61
[3]   AN OPTICALLY FOCUSING X-RAY DIFFRACTION CAMERA [J].
FRANKS, A .
PROCEEDINGS OF THE PHYSICAL SOCIETY OF LONDON SECTION B, 1955, 68 (12) :1054-+
[4]  
HENDRICKSON WA, 1985, METHOD ENZYMOL, V115, P252
[5]   3-DIMENSIONAL STRUCTURE OF A HIGHLY THERMOSTABLE ENZYME, 3-ISOPROPYLMALATE DEHYDROGENASE OF THERMUS-THERMOPHILUS AT 2.2A RESOLUTION [J].
IMADA, K ;
SATO, M ;
TANAKA, N ;
KATSUBE, Y ;
MATSUURA, Y ;
OSHIMA, T .
JOURNAL OF MOLECULAR BIOLOGY, 1991, 222 (03) :725-738
[6]  
IMADA K, 1993, 16TH C INT UN CRYST
[7]   THE NUCLEOTIDE-SEQUENCE OF 3-ISOPROPYLMALATE DEHYDROGENASE GENE FROM BACILLUS-SUBTILIS [J].
IMAI, R ;
SEKIGUCHI, T ;
NOSOH, Y ;
TSUDA, K .
NUCLEIC ACIDS RESEARCH, 1987, 15 (12) :4988-4988
[8]  
JONES TA, 1985, METHOD ENZYMOL, V115, P157
[9]  
KAGAWA Y, 1984, J BIOL CHEM, V259, P2956
[10]   CRYSTALLIZATION AND PRELIMINARY-X-RAY DATA FOR 3-ISOPROPYLMALATE DEHYDROGENASE OF THERMUS-THERMOPHILUS [J].
KATSUBE, Y ;
TANAKA, N ;
TAKENAKA, A ;
YAMADA, T ;
OSHIMA, T .
JOURNAL OF BIOCHEMISTRY, 1988, 104 (05) :679-680