The glnB gene product (P-II protein) from synechococcus sp. has previously been identified among P-32-labeled proteins, and its modification state has been observed to depend on both the nitrogen source and the spectral light quality (N.F. Tsinoremas, A.M. Castets, M.A. Harrison, J.F. Allen, and N. Tandeau de Marsac, Proc. Natl. Acad. Sci. USA 88:4565-4569, 1991). As shown in this study, modification of the P-II protein primarily responds to the N-status of the cell, and its light-dependent variations are mediated through nitrate metabolism. Modification of the P-II protein results in the appearance of three isomeric forms with increasing negative charge. Unlike its homolog counterparts characterized so far, P-II in synechococcus sp. is modified by phosphorylation on a serine residue, which represents a unique kind of protein modification in bacterial nitrogen signalling pathways.