OBSERVATION OF A STERICALLY UNFAVORABLE SIDE-CHAIN CONFORMATION IN A LEUCYL RESIDUE - CRYSTAL AND MOLECULAR-STRUCTURE OF L-LEUCYL-L-LEUCINE-CENTER-DOT-DMSO SOLVATE

被引:23
作者
MITRA, SN
SUBRAMANIAN, E
机构
[1] Department of Crystallography and Biophysics, University of Madras, Guindy Campus, Madras
关键词
Dimethyl sulfoxide - Hydrogen bonding - Leucyl residue - Torsion angles;
D O I
10.1002/bip.360340903
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The crystal structure of a dipeptide L-leucyl-L-leucine (C12H24N2O3) has been determined. The crystals are monoclinic, space group P2(1), with a = 5.434(4) Angstrom, b = 15.712(7) Angstrom, c = 11.275(2) Angstrom, beta = 100.41(1)degrees, and Z = 2. The crystals contain one molecule of dimethyl sulfoxide (DMSO) as solvent of crystallization for each dipeptide molecule. The structure has been solved by direct methods and refined to a final R index of 0.059 for 920 reflections (sin theta/lambda less than or equal to 0.60 Angstrom(-1)) with I greater than or equal to 2 sigma (I). The trans peptide unit shows substantial degree of non-planarity (Delta omega = 14 degrees). The peptide backbone adopts an extended conformation with torsion angles of psi(1) = 138(1)degrees, omega(1) = 166(1)degrees, phi(2) = -149.3(7)degrees, psi(21), = 164.2(7)degrees, and psi(22) = -15(1)degrees. For the first leucyl residue, the side-chain conformation is specified by the torsion angles (1) chi(1) = 176.7(7)degrees, (1) chi(22) = 62(1)degrees, (1) chi(22) = -177.4(8)degrees; the second leucyl residue adopts a sterically unfavorable conformation with (2) chi(1) = 61(1)degrees, (2) chi(21) = 97(1)degrees, and (2) chi(22) = -151(1)degrees. The packing involves head-to-tail interaction of peptide molecules and segregation of polar and nonpolar regions. The DMSO molecule is strongly hydrogen bonded to the terminal NH3+ group. (C) 1994 John Wiley & Sons, Inc.
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页码:1139 / 1143
页数:5
相关论文
共 16 条
[1]   STRUCTURE OF BETA-POLY-L-ALANINE - REFINED ATOMIC CO-ORDINATES FOR AN ANTI-PARALLEL BETA-PLEATED SHEET [J].
ARNOTT, S ;
DOVER, SD ;
ELLIOTT, A .
JOURNAL OF MOLECULAR BIOLOGY, 1967, 30 (01) :201-&
[2]  
BENEDETTI E, 1983, INT J PEPT PROT RES, V22, P1
[3]  
EGGLESTON DS, 1985, INT J PEPT PROT RES, V26, P509
[4]   STRUCTURE OF THE TETRAHYDRATE OF THE N-TERMINAL TETRAPEPTIDE FROM ANGIOTENSIN-II [J].
FELDMAN, SH ;
EGGLESTON, DS .
ACTA CRYSTALLOGRAPHICA SECTION C-CRYSTAL STRUCTURE COMMUNICATIONS, 1990, 46 :678-682
[5]   THE CRYSTAL-STRUCTURES OF [MET5] ENKEPHALIN AND A 3RD FORM OF [LEU5]ENKEPHALIN - OBSERVATIONS OF A NOVEL PLEATED BETA-SHEET [J].
GRIFFIN, JF ;
LANGS, DA ;
SMITH, GD ;
BLUNDELL, TL ;
TICKLE, IJ ;
BEDARKAR, S .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1986, 83 (10) :3272-3276
[6]   MOLECULAR-STRUCTURES OF L-LEU-L-TYR, GLY-D,L-MET P-TOLUENESULFONATE AND L-HIS-L-LEU [J].
KRAUSE, JA ;
BAURES, PW ;
EGGLESTON, DS .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1993, 49 :123-130
[7]  
KRAUSE JA, 1992, IN PRESS INT J PEPTI
[8]   SPECIFIC RECOGNITION IN THE TERTIARY STRUCTURE OF BETA-SHEETS OF PROTEINS [J].
LIFSON, S ;
SANDER, C .
JOURNAL OF MOLECULAR BIOLOGY, 1980, 139 (04) :627-639
[9]  
MOTHERWELL WDS, 1978, PLUTO PROGRAM PLOTTI
[10]  
NARAYANA SVL, 1984, INT J PEPT PROT RES, V24, P25