PHYLOGENY OF HUMAN BETA-GLOBIN HAPLOTYPES AND ITS IMPLICATIONS FOR RECENT HUMAN-EVOLUTION

被引:70
作者
LONG, JC
CHAKRAVARTI, A
BOEHM, CD
ANTONARAKIS, S
KAZAZIAN, HH
机构
[1] UNIV PITTSBURGH,GRAD SCH PUBL HLTH,DEPT BIOSTAT,HUMAN GENET PROGRAM,PITTSBURGH,PA 15261
[2] JOHNS HOPKINS UNIV,SCH MED,DEPT PEDIAT,BALTIMORE,MD 21205
关键词
DNA polymorphism; Evolutionary relationships; Genetic diversity; Rare variants;
D O I
10.1002/ajpa.1330810112
中图分类号
Q98 [人类学];
学科分类号
030303 ;
摘要
The evolutionary histories and relationships among African, Eurasian, and Pacific Island populations are investigated by using observation on five polymorphic restriction sites in the β‐globin gene cluster. We present new data on 222 chromosomes from a global sample and combine these with previously published observations on 591 chromosomes. It is shown that the data are rich in rare haplotypes and that rare variants are not helpful for standard methods of population structure analysis. Consequently, a new approach is developed. We first consider the phylogeny of β‐globin haplotypes. The roles of mutation, gene conversion, and recombination in the generation of haplotype diversity are specifically focused upon. The relationships among human populations are then inferred from the phylogenetic relationships among the haplotypes, their presence or absence, and frequencies within populations. Questions regarding whether or not a phyletic process can account for relationships among the major geographical populations and whether or not an extant human population exhibits the qualites that would be expected of an ancestral group are addressed. The results of this analysis support an African origin for modern Homo sapiens and a phyletic structuring of the major geographical regions. However, it is shown that divergence times for the various populations cannot be determined from these data. Copyright © 1990 Wiley‐Liss, Inc., A Wiley Company
引用
收藏
页码:113 / 130
页数:18
相关论文
共 56 条
[1]   NONRANDOM ASSOCIATION OF POLYMORPHIC RESTRICTION SITES IN THE BETA-GLOBIN GENE-CLUSTER [J].
ANTONARAKIS, SE ;
BOEHM, CD ;
GIARDINA, PJV ;
KAZAZIAN, HH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1982, 79 (01) :137-141
[2]  
AQUADRO CF, 1986, GENETICS, V114, P1165
[3]   USE OF RESTRICTION ENDONUCLEASES TO MEASURE MITOCHONDRIAL-DNA SEQUENCE RELATEDNESS IN NATURAL-POPULATIONS .2. MITOCHONDRIAL-DNA CLONES AND MATRIARCHAL PHYLOGENY WITHIN AND AMONG GEOGRAPHIC POPULATIONS OF THE POCKET GOPHER, GEOMYS-PINETIS [J].
AVISE, JC ;
GIBLINDAVIDSON, C ;
LAERM, J ;
PATTON, JC ;
LANSMAN, RA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1979, 76 (12) :6694-6698
[4]  
BREGA A, 1986, AM J HUM GENET, V39, P502
[5]   MITOCHONDRIAL-DNA AND HUMAN-EVOLUTION [J].
CANN, RL ;
STONEKING, M ;
WILSON, AC .
NATURE, 1987, 325 (6099) :31-36
[6]  
Cavalli-Sforza L.L., 1971, GENETICS HUMAN POPUL
[7]   ANALYSIS OF EVOLUTION - EVOLUTIONARY RATES, INDEPENDENCE AND TREENESS [J].
CAVALLISFORZA, LL ;
PIAZZA, A .
THEORETICAL POPULATION BIOLOGY, 1975, 8 (02) :127-165
[8]   PHYLOGENETIC ANALYSIS - MODELS AND ESTIMATION PROCEDURES [J].
CAVALLISFORZA, LL ;
EDWARDS, AWF .
EVOLUTION, 1967, 21 (03) :550-+
[9]   DNA MARKERS AND GENETIC-VARIATION IN THE HUMAN SPECIES [J].
CAVALLISFORZA, LL ;
KIDD, JR ;
KIDD, KK ;
BUCCI, C ;
BOWCOCK, AM ;
HEWLETT, BS ;
FRIEDLAENDER, JS .
COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY, 1986, 51 :411-417
[10]  
CHAKRABORTY R, 1988, AM J HUM GENET, V43, P709