THE MECHANISM OF PROTEIN CRYSTAL-GROWTH FROM LIPID LAYERS

被引:98
作者
HEMMING, SA
BOCHKAREV, A
DARST, SA
KORNBERG, RD
ALA, P
YANG, DSC
EDWARDS, AM
机构
[1] MCMASTER UNIV,DEPT PATHOL,HAMILTON,ON L8N 3Z5,CANADA
[2] MCMASTER UNIV,DEPT BIOCHEM,HAMILTON,ON L8N 3Z5,CANADA
[3] ROCKEFELLER UNIV,NEW YORK,NY 10021
[4] STANFORD UNIV,DEPT CELL BIOL,STANFORD,CA 94305
关键词
PROTEIN CRYSTALLIZATION; EPITAXIAL GROWTH; LIPID-LAYER CRYSTALLIZATION; 2-DIMENSIONAL CRYSTALS;
D O I
10.1006/jmbi.1994.0086
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Two-dimensional (2D) crystals of proteins on lipid monolayers can initiate the formation of large three-dimensional (3D) crystals suitable for X-ray diffraction studies. The role of the 2D crystals in this process has not been firmly established. While it is likely that the 2D crystals serve as nuclei for epitaxial crystal growth, other mechanisms, such as non-specific nucleation induced by the high local concentration of the protein at the surface of the Lipid layer, cannot be excluded. Using streptavidin as a model system, we have now firmly established that 3D crystal growth from 2D crystals on lipid layers occurs by epitaxy. We show that 2D crystals of streptavidin (space group C222) on biotinated lipid layers nucleate the growth of a 3D crystal form (space group I4(I)22) that possesses a structural similarity with the 2D crystal, but have no effect on the growth of 3D crystal forms (I222 and P2(1)) that are unrelated to the 2D crystal. At lower pH, a new 3D crystal form (space group Pi), unrelated to the previously described 2D crystals, grew from Lipid layers. This discovery initially raised concern about the validity of the epitaxial mechanism, but these concerns were alleviated with the subsequent discovery of a structurally related 2D P1 crystal that grew in similar solution conditions. Some parameters affecting epitaxial growth of both the Pi and I4(I)22 crystals were investigated, revealing several noteworthy features of the epitaxial growth. (1) 2D crystals are very effective nucleating agents; for instance, the P1 2D crystals can direct the growth of P1 3D crystals even under conditions that favour the growth of other crystal forms. (2) The epitaxial 3D crystal grow very rapidly and at amazingly low protein concentrations; P1 3D crystals can be grown from solutions as low as 10 mu M streptavidin. (3) There is no obligate requirement for the deposition of ; pre-formed 2D crystals; lipid layers alone are equally effective at promoting epitaxial crystal growth.
引用
收藏
页码:308 / 316
页数:9
相关论文
共 14 条
[1]   3-DIMENSIONAL STRUCTURE DETERMINATION BY ELECTRON-MICROSCOPY OF TWO-DIMENSIONAL CRYSTALS [J].
AMOS, LA ;
HENDERSON, R ;
UNWIN, PNT .
PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 1983, 39 (03) :183-231
[2]  
BERNSTEIN LA, 1977, J MOL BIOL, V68, P535
[3]  
BRUNGER AT, 1992, XPLOR VERSION 3 1 SY
[4]   3-DIMENSIONAL STRUCTURE OF ESCHERICHIA-COLI RNA-POLYMERASE HOLOENZYME DETERMINED BY ELECTRON CRYSTALLOGRAPHY [J].
DARST, SA ;
KUBALEK, EW ;
KORNBERG, RD .
NATURE, 1989, 340 (6236) :730-732
[5]   3-DIMENSIONAL STRUCTURE OF YEAST RNA POLYMERASE-II AT 16-A RESOLUTION [J].
DARST, SA ;
EDWARDS, AM ;
KUBALEK, EW ;
KORNBERG, RD .
CELL, 1991, 66 (01) :121-128
[6]   2-DIMENSIONAL CRYSTALS OF STREPTAVIDIN ON BIOTINYLATED LIPID LAYERS AND THEIR INTERACTIONS WITH BIOTINYLATED MACROMOLECULES [J].
DARST, SA ;
AHLERS, M ;
MELLER, PH ;
KUBALEK, EW ;
BLANKENBURG, R ;
RIBI, HO ;
RINGSDORF, H ;
KORNBERG, RD .
BIOPHYSICAL JOURNAL, 1991, 59 (02) :387-396
[7]   EPITAXIAL-GROWTH OF PROTEIN CRYSTALS ON LIPID LAYERS [J].
EDWARDS, AM ;
DARST, SA ;
HEMMING, SA ;
LI, Y ;
KORNBERG, RD .
NATURE STRUCTURAL BIOLOGY, 1994, 1 (03) :195-197
[8]   MERLOT, AN INTEGRATED PACKAGE OF COMPUTER-PROGRAMS FOR THE DETERMINATION OF CRYSTAL-STRUCTURES BY MOLECULAR REPLACEMENT [J].
FITZGERALD, PMD .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1988, 21 (03) :273-278
[9]   MODEL FOR THE STRUCTURE OF BACTERIORHODOPSIN BASED ON HIGH-RESOLUTION ELECTRON CRYOMICROSCOPY [J].
HENDERSON, R ;
BALDWIN, JM ;
CESKA, TA ;
ZEMLIN, F ;
BECKMANN, E ;
DOWNING, KH .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 213 (04) :899-929
[10]   CRYSTAL-STRUCTURE OF CORE STREPTAVIDIN DETERMINED FROM MULTIWAVELENGTH ANOMALOUS DIFFRACTION OF SYNCHROTRON RADIATION [J].
HENDRICKSON, WA ;
PAHLER, A ;
SMITH, JL ;
SATOW, Y ;
MERRITT, EA ;
PHIZACKERLEY, RP .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1989, 86 (07) :2190-2194