PROTEIN MOTIFS .4. THE STRUCTURE AND EVOLUTION OF ALPHA/BETA BARREL PROTEINS

被引:156
作者
REARDON, D
FARBER, GK
机构
[1] Department of Biochemistry, Pennsylvania State University, University Park
[2] Department of Biochemistry, 108 Althouse Laboratory, Pennsylvania State University, University Park
关键词
TIM BARREL; MOLECULAR EVOLUTION;
D O I
10.1096/fasebj.9.7.7737457
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Roughly 10% of all known enzyme structures have an alpha/beta barrel domain. The members of this large family of proteins catalyze very different types of reactions. Such diversity of function has made this family a target for protein engineering. The evolutionary history of this family has been the subject of vigorous debate. In this paper, arguments are made to support the divergence of all members of this family from a common ancestor. Because of the lack of strong sequence homology, the ancestral molecule must be very old. A hypothesis concerning the relationship between chemical mechanism and evolutionary history is discussed. Evidence is presented to suggest that convergent molecular evolution occurs when there is only one energetically reasonable pathway for a chemical reaction.
引用
收藏
页码:497 / 503
页数:7
相关论文
共 42 条
[1]   ISOTOPIC EXCHANGE PLUS SUBSTRATE AND INHIBITION-KINETICS OF D-XYLOSE ISOMERASE DO NOT SUPPORT A PROTON-TRANSFER MECHANISM [J].
ALLEN, KN ;
LAVIE, A ;
FARBER, GK ;
GLASFELD, A ;
PETSKO, GA ;
RINGE, D .
BIOCHEMISTRY, 1994, 33 (06) :1481-1487
[2]   STRUCTURE OF CHICKEN MUSCLE TRIOSE PHOSPHATE ISOMERASE DETERMINED CRYSTALLOGRAPHICALLY AT 2.5A RESOLUTION USING AMINO-ACID SEQUENCE DATA [J].
BANNER, DW ;
BLOOMER, AC ;
PETSKO, GA ;
PHILLIPS, DC ;
POGSON, CI ;
WILSON, IA ;
CORRAN, PH ;
FURTH, AJ ;
MILMAN, JD ;
OFFORD, RE ;
PRIDDLE, JD ;
WALEY, SG .
NATURE, 1975, 255 (5510) :609-614
[3]   COMPUTER-SIMULATION AND ANALYSIS OF THE REACTION PATHWAY OF TRIOSEPHOSPHATE ISOMERASE [J].
BASH, PA ;
FIELD, MJ ;
DAVENPORT, RC ;
PETSKO, GA ;
RINGE, D ;
KARPLUS, M .
BIOCHEMISTRY, 1991, 30 (24) :5826-5832
[4]   3-DIMENSIONAL STRUCTURE OF PHOSPHOTRIESTERASE - AN ENZYME CAPABLE OF DETOXIFYING ORGANOPHOSPHATE NERVE AGENTS [J].
BENNING, MM ;
KUO, JM ;
RAUSHEL, FM ;
HOLDEN, HM .
BIOCHEMISTRY, 1994, 33 (50) :15001-15007
[5]   MECHANISM FOR ALDOSE-KETOSE INTERCONVERSION BY D-XYLOSE ISOMERASE INVOLVING RING-OPENING FOLLOWED BY A 1,2-HYDRIDE SHIFT [J].
COLLYER, CA ;
HENRICK, K ;
BLOW, DM .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 212 (01) :211-235
[6]   SETOR - HARDWARE-LIGHTED 3-DIMENSIONAL SOLID MODEL REPRESENTATIONS OF MACROMOLECULES [J].
EVANS, SV .
JOURNAL OF MOLECULAR GRAPHICS, 1993, 11 (02) :134-&
[7]   CRYSTALLOGRAPHIC STUDIES OF THE MECHANISM OF XYLOSE ISOMERASE [J].
FARBER, GK ;
GLASFELD, A ;
TIRABY, G ;
RINGE, D ;
PETSKO, GA .
BIOCHEMISTRY, 1989, 28 (18) :7289-7297
[8]   THE EVOLUTION OF ALPHA-BETA-BARREL ENZYMES [J].
FARBER, GK ;
PETSKO, GA .
TRENDS IN BIOCHEMICAL SCIENCES, 1990, 15 (06) :228-&
[9]   AN ALPHA/BETA-BARREL FULL OF EVOLUTIONARY TROUBLE [J].
FARBER, GK .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1993, 3 (03) :409-412
[10]  
FOSX KM, 1994, AM CRYSTAL ASS ANN M, V22, P167