PREDICTION OF LOW-ENERGY STRUCTURES OF MET-ENKEPHALIN BY MONTE-CARLO SIMULATED ANNEALING

被引:44
作者
OKAMOTO, Y
KIKUCHI, T
KAWAI, H
机构
[1] CIBA GEIGY JAPAN LTD, IRL, TAKARAZUKA, HYOGO 665, JAPAN
[2] UNIV TOKYO, DEPT PHYS, TOKYO 113, JAPAN
关键词
D O I
10.1246/cl.1992.1275
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The efficiency of the Monte Carlo simulated annealing method for prediction of the low-energy structures of Met-enkephalin is examined with the exact ECEPP function. Among the 40 obtained conformations, eleven, including the lowest-energy conformation, exhibit structure similar to the tertiary structure predicted by the Monte Carlo with minimization method. The average energy of these conformations are considerably lower than those of the remaining conformations. These findings prove the effectiveness of the method.
引用
收藏
页码:1275 / 1278
页数:4
相关论文
共 11 条
[1]  
[Anonymous], 1988, J MOL STRUCT THEOCHE
[2]   MONTE-CARLO SIMULATED ANNEALING PREDICTION FOR ALPHA-HELIX PROPENSITY OF AMINO-ACID HOMOPOLYMERS [J].
FUKUGITA, M ;
NAKAZAWA, T ;
KAWAI, H ;
OKAMOTO, Y .
CHEMISTRY LETTERS, 1991, (07) :1279-1282
[3]   A PREDICTION OF TERTIARY STRUCTURES OF PEPTIDE BY THE MONTE-CARLO SIMULATED ANNEALING METHOD [J].
KAWAI, H ;
KIKUCHI, T ;
OKAMOTO, Y .
PROTEIN ENGINEERING, 1989, 3 (02) :85-94
[4]   PREDICTION OF ALPHA-HELIX FOLDING OF ISOLATED C-PEPTIDE OF RIBONUCLEASE A BY MONTE-CARLO SIMULATED ANNEALING [J].
KAWAI, H ;
OKAMOTO, Y ;
FUKUGITA, M ;
NAKAZAWA, T ;
KIKUCHI, T .
CHEMISTRY LETTERS, 1991, (02) :213-216
[5]   OPTIMIZATION BY SIMULATED ANNEALING [J].
KIRKPATRICK, S ;
GELATT, CD ;
VECCHI, MP .
SCIENCE, 1983, 220 (4598) :671-680
[6]  
NAKAZAWA T, UNPUB PROTEIN ENG
[7]   A COMPARATIVE-STUDY OF THE SIMULATED-ANNEALING AND MONTE CARLO-WITH-MINIMIZATION APPROACHES TO THE MINIMUM-ENERGY STRUCTURES OF POLYPEPTIDES - [MET]-ENKEPHALIN [J].
NAYEEM, A ;
VILA, J ;
SCHERAGA, HA .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1991, 12 (05) :594-605
[8]   ALPHA-HELIX FOLDING BY MONTE-CARLO SIMULATED ANNEALING IN ISOLATED C-PEPTIDE OF RIBONUCLEASE-A [J].
OKAMOTO, Y ;
FUKUGITA, M ;
NAKAZAWA, T ;
KAWAI, H .
PROTEIN ENGINEERING, 1991, 4 (06) :639-647
[9]  
OKAMOTO Y, IN PRESS
[10]   INTERMOLECULAR POTENTIALS FROM CRYSTAL DATA .6. DETERMINATION OF EMPIRICAL POTENTIALS FOR O-H=O=C HYDROGEN-BONDS FROM PACKING CONFIGURATIONS [J].
SIPPL, MJ ;
NEMETHY, G ;
SCHERAGA, HA .
JOURNAL OF PHYSICAL CHEMISTRY, 1984, 88 (25) :6231-6233