3-DIMENSIONAL STRUCTURE OF THE BINUCLEAR METAL CENTER OF PHOSPHOTRIESTERASE

被引:194
作者
BENNING, MM
KUO, JM
RAUSHEL, FM
HOLDEN, HM
机构
[1] UNIV WISCONSIN,DEPT BIOCHEM,MADISON,WI 53705
[2] TEXAS A&M UNIV,DEPT CHEM,COLLEGE STN,TX 77843
关键词
D O I
10.1021/bi00025a002
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Phosphotriesterase, as isolated from Pseudomonas diminuta, is capable of detoxifying widely used pesticides such as paraoxon and parathion and various mammalian acetylcholinesterase inhibitors. The enzyme requires a binuclear metal center for activity. Recently, the three-dimensional structure of the apoenzyme was solved (Benning et al., 1994) and shown to consist of an alpha/beta-barrel. Here we describe the three-dimensional structure of the holoenzyme, reconstituted with cadmium, as determined by X-ray crystallographic analysis to 2.0-Angstrom resolution. Crystals employed in the investigation belonged to the space group C2 with unit cell dimensions of a = 129.5 Angstrom, b = 91.4 Angstrom, c = 69.4 Angstrom, beta = 91.9 degrees, and two subunits in the asymmetric unit. There are significant differences in the three-dimensional architecture of the apo and hole forms of the enzyme such that their cr-carbon positions superimpose with a root-mean-square deviation of 3.4 Angstrom. The binuclear metal center is located at the C-terminus of the beta-barrel with the cadmiums separated by 3.8 Angstrom. There are two bridging ligands to the metals: a water molecule (or possibly a hydroxide ion) and a carbamylated lysine residue (Lys 169). The more buried cadmium is surrounded by His 55, His 57, Lys 169, Asp 301, and the bridging water in a trigonal bipyramidal arrangement. The second metal is coordinated in a distorted octahedral geometry by His 201, His 230, Lys 169, the bridging water molecule, and two additional solvents.
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页码:7973 / 7978
页数:6
相关论文
共 16 条
[1]   3-DIMENSIONAL STRUCTURE OF PHOSPHOTRIESTERASE - AN ENZYME CAPABLE OF DETOXIFYING ORGANOPHOSPHATE NERVE AGENTS [J].
BENNING, MM ;
KUO, JM ;
RAUSHEL, FM ;
HOLDEN, HM .
BIOCHEMISTRY, 1994, 33 (50) :15001-15007
[2]   PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].
BERNSTEIN, FC ;
KOETZLE, TF ;
WILLIAMS, GJB ;
MEYER, EF ;
BRICE, MD ;
RODGERS, JR ;
KENNARD, O ;
SHIMANOUCHI, T ;
TASUMI, M .
JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542
[3]   METHODS AND PROGRAMS FOR DIRECT-SPACE EXPLOITATION OF GEOMETRIC REDUNDANCIES [J].
BRICOGNE, G .
ACTA CRYSTALLOGRAPHICA SECTION A, 1976, 32 (SEP1) :832-847
[4]   ANTIFERROMAGNETIC COUPLING IN THE BINUCLEAR METAL CLUSTER OF MANGANESE-SUBSTITUTED PHOSPHOTRIESTERASE [J].
CHAE, MY ;
OMBURO, GA ;
LINDAHL, PA ;
RAUSHEL, FM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1993, 115 (25) :12173-12174
[6]   AUTOMATIC-INDEXING OF ROTATION DIFFRACTION PATTERNS [J].
KABSCH, W .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1988, 21 :67-71
[7]   MOLSCRIPT - A PROGRAM TO PRODUCE BOTH DETAILED AND SCHEMATIC PLOTS OF PROTEIN STRUCTURES [J].
KRAULIS, PJ .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1991, 24 :946-950
[8]   IDENTIFICATION OF THE HISTIDINE LIGANDS TO THE BINUCLEAR METAL CENTER OF PHOSPHOTRIESTERASE BY SITE-DIRECTED MUTAGENESIS [J].
KUO, JM ;
RAUSHEL, FM .
BIOCHEMISTRY, 1994, 33 (14) :4265-4272
[9]  
LAI KH, 1994, J BIOL CHEM, V269, P16579
[10]   MECHANISM AND STEREOCHEMICAL COURSE AT PHOSPHORUS OF THE REACTION CATALYZED BY A BACTERIAL PHOSPHOTRIESTERASE [J].
LEWIS, VE ;
DONARSKI, WJ ;
WILD, JR ;
RAUSHEL, FM .
BIOCHEMISTRY, 1988, 27 (05) :1591-1597