THEORETICAL-STUDIES ON HYDROGEN-BONDING INTERACTIONS BETWEEN PEPTIDE UNITS

被引:11
作者
AIDA, M
机构
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D O I
10.1246/bcsj.66.3423
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The hydrogen bonding interaction energies between peptide units were calculated using the ab initio MO method with the STO-3G, 7,3/2,1 and 6-31G basis sets and a correction of the basis set superposition errors (BSSE). The same systems were also investigated using an ab initio potential which has recently been developed and the AMBER potential, which is widely used. The energy profiles calculated using the ab initio potential are similar to those calculated using the 6-31G basis set. The distance and angle dependencies of the hydrogen bonding interactions are well represented by the ab initio potential. In contrast, they are not reproduced by the AMBER potential.
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页码:3423 / 3429
页数:7
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  • [21] ABINITIO STUDIES OF MOLECULAR GEOMETRIES .27. OPTIMIZED MOLECULAR-STRUCTURES AND CONFORMATIONAL-ANALYSIS OF N-ALPHA-ACETYL-N-METHYLALANINAMIDE AND COMPARISON WITH PEPTIDE CRYSTAL DATA AND EMPIRICAL CALCULATIONS
    SCARSDALE, JN
    VANALSENOY, C
    KLIMKOWSKI, VJ
    SCHAFER, L
    MOMANY, FA
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1983, 105 (11) : 3438 - 3445
  • [22] ABINITIO STUDIES OF STRUCTURAL FEATURES NOT EASILY AMENABLE TO EXPERIMENT .23. MOLECULAR-STRUCTURES AND CONFORMATIONAL-ANALYSIS OF THE DIPEPTIDE N-ACETYL-N'-METHYL GLYCYL AMIDE AND THE SIGNIFICANCE OF LOCA GEOMETRIES FOR PEPTIDE STRUCTURES
    SCHAFER, L
    VANALSENOY, C
    SCARSDALE, JN
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1982, 76 (03) : 1439 - 1444
  • [23] AN ALL ATOM FORCE-FIELD FOR SIMULATIONS OF PROTEINS AND NUCLEIC-ACIDS
    WEINER, SJ
    KOLLMAN, PA
    NGUYEN, DT
    CASE, DA
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 1986, 7 (02) : 230 - 252
  • [24] A NEW FORCE-FIELD FOR MOLECULAR MECHANICAL SIMULATION OF NUCLEIC-ACIDS AND PROTEINS
    WEINER, SJ
    KOLLMAN, PA
    CASE, DA
    SINGH, UC
    GHIO, C
    ALAGONA, G
    PROFETA, S
    WEINER, P
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1984, 106 (03) : 765 - 784
  • [25] QUANTUM AND MOLECULAR MECHANICAL STUDIES ON ALANYL DIPEPTIDE
    WEINER, SJ
    SINGH, UC
    ODONNELL, TJ
    KOLLMAN, PA
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1984, 106 (21) : 6243 - 6245