Rice functional genomics: decades' efforts and roads ahead

被引：31

作者：

Rongzhi Chen ^{[1
]}

Yiwen Deng ^{[2
]}

Yanglin Ding ^{[3
]}

Jingxin Guo ^{[4
]}

Jie Qiu ^{[5
]}

Bing Wang ^{[6
]}

Changsheng Wang ^{[7
]}

Yongyao Xie ^{[4
]}

Zhihua Zhang ^{[8
]}

Jiaxin Chen ^{[5
]}

Letian Chen ^{[4
]}

Chengcai Chu ^{[6
]}

Guangcun He ^{[1
]}

Zuhua He ^{[2
]}

Xuehui Huang ^{[5
]}

Yongzhong Xing ^{[9
]}

Shuhua Yang ^{[3
]}

Daoxin Xie ^{[10
]}

Yaoguang Liu ^{[4
]}

Jiayang Li ^{[6
]}

机构：

[1] MOE Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University

[2] State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University

[3] National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology & Ecology, Chinese Academy of Sciences

[4] State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University

[5] State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University

[6] Shanghai Key Laboratory of Plant Molecular Sciences, College of Life Sciences, Shanghai Normal University

[7] State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Innovation Academy for Seed Design, Chinese Academy of Sciences

[8] National Center for Gene Research, Center of Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology,Chinese Academy of Sciences

[9] College of Plant Science, Jilin University

[10] National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research, Huazhong Agricultural University

来源：

Science China Life Sciences | 2022年 / 65卷 / 01期

基金：

中国国家自然科学基金;

关键词：

D O I：

暂无

中图分类号：

S511 [稻];

学科分类号：

0901 ;

摘要：

Rice(Oryza sativa L.) is one of the most important crops in the world. Since the completion of rice reference genome sequences,tremendous progress has been achieved in understanding the molecular mechanisms on various rice traits and dissecting the underlying regulatory networks. In this review, we summarize the research progress of rice biology over past decades, including omics, genome-wide association study, phytohormone action, nutrient use, biotic and abiotic responses, photoperiodic flowering,and reproductive development(fertility and sterility). For the roads ahead, cutting-edge technologies such as new genomics methods, high-throughput phenotyping platforms, precise genome-editing tools, environmental microbiome optimization, and synthetic methods will further extend our understanding of unsolved molecular biology questions in rice, and facilitate integrations of the knowledge for agricultural applications.

引用

页码：33 / 92

页数：60

共 527 条

[1] Balancing selection and wild gene pool contribute to resistance in global rice germplasm against planthopper[J]. Cong Zhou,Qian Zhang,Yu Chen,Jin Huang,Qin Guo,Yi Li,Wensheng Wang,Yongfu Qiu,Wei Guan,Jing Zhang,Jianping Guo,Shaojie Shi,Di Wu,Xiaohong Zheng,Lingyun Nie,Jiaoyan Tan,Chaomei Huang,Yinhua Ma,Fang Yang,Xiqin Fu,Bo Du,Lili Zhu,Rongzhi Chen,Zhikang Li,Longping Yuan,Guangcun He.Journal of Integrative Plant Biology. 2021(10)
[2] MIT1, encoding a 15-cis-ζ-carotene isomerase, regulates tiller number and stature in rice
Lihua Liu
Mengmeng Ren
Peng Peng
Yan Chun
Lu Li
Jinfeng Zhao
Jingjing Fang
Lixiang Peng
Jijun Yan
Jinfang Chu
Yiqin Wang
Shoujiang Yuan
Xueyong Li
[J]. JournalofGeneticsandGenomics, 2021, 48 (01) : 88 - 91
[3] Protein kinases in plant responses to drought, salt,and cold stress
Xuexue Chen
Yanglin Ding
Yongqing Yang
Chunpeng Song
Baoshan Wang
Shuhua Yang
Yan Guo
Zhizhong Gong
[J]. Journal of Integrative Plant Biology, 2021, 63 (01) : 53 - 78
[4] Deficiency of mitochondrial outer membrane protein 64 confers rice resistance to both piercing-sucking and chewing insects in rice[J]. Hui-Min Guo,Hai-Chao Li,Shi-Rong Zhou,Hong-Wei Xue,Xue-Xia Miao.Journal of Integrative Plant Biology. 2020(12)
[5] Divergence in flowering time is a major component contributing to reproductive isolation between two wild rice species(Oryza rufipogon and O. nivara)
Xun Xu
Qing-Lin Meng
Mu-Fan Geng
Ning-Ning Ren
Lian Zhou
Yu-Su Du
Zhe Cai
Mei-Xia Wang
Xin Wang
Xiu-Hua Wang
Jing-Dan Han
Shuai Jiang
Chun-Yan Jing
Rong Liu
Xiao-Ming Zheng
Qing-Wen Yang
Fu-Min Zhang
Song Ge
[J]. Science China(Life Sciences), 2020, 63 (11) : 1714 - 1724
[6] A chromosome-level genome assembly of the wild rice Oryza rufipogon facilitates tracing the origins of Asian cultivated rice[J]. Xianrong Xie,Huilong Du,Huiwu Tang,Jianian Tang,Xiyu Tan,Weizhi Liu,Tie Li,Zhansheng Lin,Chengzhi Liang,Yao-Guang Liu.Science China（Life Sciences）. 2021(02)
[7] Understanding the molecular mechanisms of trade-offs between plant growth and immunity[J]. Jing Wang,Xiaoyu Long,Mawsheng Chern,Xuewei Chen.Science China（Life Sciences）. 2021(02)
[8] Deciphering Rice Lesion Mimic Mutants to Understand Molecular Network Governing Plant Immunity and Growth[J]. ZHU Xiaobo,ZE Mu,CHERN Mawsheng,CHEN Xuewei,WANG Jing.Rice Science. 2020(04)
[9] FoxO directly regulates the expression of TOR/S6K and vitellogenin to modulate the fecundity of the brown planthopper[J]. Yi Dong,Weiwen Chen,Kui Kang,Rui Pang,Yipei Dong,Kai Liu,Wenqing Zhang.Science China（Life Sciences）. 2021(01)
[10] Analysis of genetic architecture and favorable allele usage of agronomic traits in a large collection of Chinese rice accessions[J]. Xiuxiu Li,Zhuo Chen,Guomin Zhang,Hongwei Lu,Peng Qin,Ming Qi,Ying Yu,Bingke Jiao,Xianfeng Zhao,Qiang Gao,Hao Wang,Yunyu Wu,Juntao Ma,Liyan Zhang,Yongli Wang,Lingwei Deng,Shanguo Yao,Zhukuang Cheng,Diqiu Yu,LihuangZhu,Yongbiao Xue,Chengcai Chu,Aihong Li,Shigui Li,Chengzhi Liang.Science China（Life Sciences）. 2020(11)

← 1 2 3 4 5 6 7 8 9 10 →