Rice functional genomics: decades' efforts and roads ahead

被引:31
作者
Rongzhi Chen [1 ]
Yiwen Deng [2 ]
Yanglin Ding [3 ]
Jingxin Guo [4 ]
Jie Qiu [5 ]
Bing Wang [6 ]
Changsheng Wang [7 ]
Yongyao Xie [4 ]
Zhihua Zhang [8 ]
Jiaxin Chen [5 ]
Letian Chen [4 ]
Chengcai Chu [6 ]
Guangcun He [1 ]
Zuhua He [2 ]
Xuehui Huang [5 ]
Yongzhong Xing [9 ]
Shuhua Yang [3 ]
Daoxin Xie [10 ]
Yaoguang Liu [4 ]
Jiayang Li [6 ]
机构
[1] MOE Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University
[2] State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University
[3] National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology & Ecology, Chinese Academy of Sciences
[4] State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University
[5] State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University
[6] Shanghai Key Laboratory of Plant Molecular Sciences, College of Life Sciences, Shanghai Normal University
[7] State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Innovation Academy for Seed Design, Chinese Academy of Sciences
[8] National Center for Gene Research, Center of Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology,Chinese Academy of Sciences
[9] College of Plant Science, Jilin University
[10] National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research, Huazhong Agricultural University
基金
中国国家自然科学基金;
关键词
D O I
暂无
中图分类号
S511 [稻];
学科分类号
0901 ;
摘要
Rice(Oryza sativa L.) is one of the most important crops in the world. Since the completion of rice reference genome sequences,tremendous progress has been achieved in understanding the molecular mechanisms on various rice traits and dissecting the underlying regulatory networks. In this review, we summarize the research progress of rice biology over past decades, including omics, genome-wide association study, phytohormone action, nutrient use, biotic and abiotic responses, photoperiodic flowering,and reproductive development(fertility and sterility). For the roads ahead, cutting-edge technologies such as new genomics methods, high-throughput phenotyping platforms, precise genome-editing tools, environmental microbiome optimization, and synthetic methods will further extend our understanding of unsolved molecular biology questions in rice, and facilitate integrations of the knowledge for agricultural applications.
引用
收藏
页码:33 / 92
页数:60
相关论文
共 527 条
[21]  
Hd1 function conversion in regulating heading is dependent on gene combinations of Ghd7,Ghd8,and Ghd7.1 under long-day conditions in rice. Zhang Z,Zhang B,Qi F,Wu H,Li Z,Xing Y. Molecular Breeding . 2019
[22]  
Designing future crops:challenges and strategies for sustainable agriculture. TIAN Z,WANG J W,LI J,et al. Plant Journal The . 2021
[23]  
Nitrogen-use divergence between Indica and Japonica rice:variation at nitrate assimilation. Zhang,Z,Chu,C. MolPlant . 2020
[24]  
Hormone Metabolism and Signalling in Plants. Wang,H,Wei,Z,Li,J,Wang,X. Academic Press . 2017
[25]  
Hormone Metabolism and Signalling in Plants. Li,J,Wu,Y,Xie,Q,Gong,Z. Academic Press . 2017
[26]  
Hormone Metabolism and Signalling in Plants. Wang,B,Wang,Y,Li,J. Academic Press . 2017
[27]  
Plant abiotic stress response and nutrient use efficiency[J]. Zhizhong Gong,Liming Xiong,Huazhong Shi,Shuhua Yang,Luis R.Herrera-Estrella,Guohua Xu,Dai-Yin Chao,Jingrui Li,Peng-Yun Wang,Feng Qin,Jigang Li,Yanglin Ding,Yiting Shi,Yu Wang,Yongqing Yang,Yan Guo,Jian-Kang Zhu.Science China(Life Sciences). 2020(05)
[28]  
Natural variation in the promoter of OsHMA3 contributes to differential grain cadmium accumulation between Indica and Japonica rice[J]. Chao-Lei Liu,Zhen-Yu Gao,Lian-Guang Shang,Chang-Hong Yang,Ban-Pu Ruan,Da-Li Zeng,Long-Biao Guo,Fang-Jie Zhao,Chao-Feng Huang,Qian Qian.Journal of Integrative Plant Biology. 2020(03)
[29]  
Exploring the molecular basis of heterosis for plant breeding[J]. Jie Liu,Mengjie Li,Qi Zhang,Xin Wei,Xuehui Huang.Journal of Integrative Plant Biology. 2020(03)
[30]  
Prospects of utilization of inter-subspecific heterosis between indica and japonica rice[J]. ZHANG Gui-quan.Journal of Integrative Agriculture. 2020(01)