cOOpD: Reformulating COPD Classification on Chest CT Scans as Anomaly Detection Using Contrastive Representations

被引:3
作者
Almeida, Silvia D. [1 ,2 ,3 ]
Lueth, Carsten T. [4 ,5 ]
Norajitra, Tobias [1 ,3 ]
Wald, Tassilo [1 ,5 ]
Nolden, Marco [1 ]
Jaeger, Paul F. [4 ,5 ]
Heussel, Claus P. [3 ,6 ]
Biederer, Juergen [3 ,7 ]
Weinheimer, Oliver [3 ,7 ]
Maier-Hein, Klaus H. [1 ,3 ,5 ]
机构
[1] German Canc Res Ctr, Div Med Image Comp, Heidelberg, Germany
[2] Heidelberg Univ, Med Fac, Heidelberg, Germany
[3] German Ctr Lung Res DZL, Translat Lung Res Ctr Heidelberg TLRC, Heidelberg, Germany
[4] German Canc Res Ctr, Interact Machine Learning Grp, Heidelberg, Germany
[5] German Canc Res Ctr, Helmholtz Imaging, Heidelberg, Germany
[6] Thoraxklin Univ Hosp, Diagnost & Intervent Radiol Nucl Med, Heidelberg, Germany
[7] Univ Hosp, Diagnost & Intervent Radiol, Heidelberg, Germany
来源
MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION, MICCAI 2023, PT V | 2023年 / 14224卷
关键词
COPD classification; Anomaly detection; Contrastive learning;
D O I
10.1007/978-3-031-43904-9_4
中图分类号
TP18 [人工智能理论];
学科分类号
140502 [人工智能];
摘要
Classification of heterogeneous diseases is challenging due to their complexity, variability of symptoms and imaging findings. Chronic Obstructive Pulmonary Disease (COPD) is a prime example, being underdiagnosed despite being the third leading cause of death. Its sparse, diffuse and heterogeneous appearance on computed tomography challenges supervised binary classification. We reformulate COPD binary classification as an anomaly detection task, proposing cOOpD: heterogeneous pathological regions are detected as Out-of-Distribution (OOD) from normal homogeneous lung regions. To this end, we learn representations of unlabeled lung regions employing a self-supervised contrastive pretext model, potentially capturing specific characteristics of diseased and healthy unlabeled regions. A generative model then learns the distribution of healthy representations and identifies abnormalities (stemming from COPD) as deviations. Patient-level scores are obtained by aggregating region OOD scores. We show that cOOpD achieves the best performance on two public datasets, with an increase of 8.2% and 7.7% in terms of AUROC compared to the previous supervised state-of-the-art. Additionally, cOOpD yields well-interpretable spatial anomaly maps and patient-level scores which we show to be of additional value in identifying individuals in the early stage of progression. Experiments in artificially designed real-world prevalence settings further support that anomaly detection is a powerful way of tackling COPD classification. Code is at https://github.com/MIC-DKFZ/cOOpD.
引用
收藏
页码:33 / 43
页数:11
相关论文
共 27 条
[1]
Fully automatic detection and quantification of emphysema on thin section MD-CT of the chest by a new and dedicated software [J].
Achenbach, T ;
Weinheimer, O ;
Buschsieweke, C ;
Heussel, CP ;
Thelen, M ;
Kauczor, HU .
ROFO-FORTSCHRITTE AUF DEM GEBIET DER RONTGENSTRAHLEN UND DER BILDGEBENDEN VERFAHREN, 2004, 176 (10) :1409-1415
[2]
Global, regional, and national prevalence of, and risk factors for, chronic obstructive pulmonary disease (COPD) in 2019: a systematic review and modelling analysis [J].
Adeloye, Davies ;
Song, Peige ;
Zhu, Yajie ;
Campbell, Harry ;
Sheikh, Aziz ;
Rudan, Igor .
LANCET RESPIRATORY MEDICINE, 2022, 10 (05) :447-458
[3]
[Anonymous], 2023, Global Strategy for the Diagnosis, Management, and Prevention of Chronic Obstructive Pulmonary Disease (2023 Report)
[4]
Imaging Advances in Chronic Obstructive Pulmonary Disease Insights from the Genetic Epidemiology of Chronic Obstructive Pulmonary Disease (COPDGene) Study [J].
Bhatt, Surya P. ;
Washko, George R. ;
Hoffman, Eric A. ;
Newell, John D., Jr. ;
Bodduluri, Sandeep ;
Diaz, Alejandro A. ;
Galban, Craig J. ;
Silverman, Edwin K. ;
Estepar, Raul San Jose ;
Lynch, David A. .
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2019, 199 (03) :286-301
[5]
Clinical-grade computational pathology using weakly supervised deep learning on whole slide images [J].
Campanella, Gabriele ;
Hanna, Matthew G. ;
Geneslaw, Luke ;
Miraflor, Allen ;
Silva, Vitor Werneck Krauss ;
Busam, Klaus J. ;
Brogi, Edi ;
Reuter, Victor E. ;
Klimstra, David S. ;
Fuchs, Thomas J. .
NATURE MEDICINE, 2019, 25 (08) :1301-+
[6]
Potential Value of Expiratory CT in Quantitative Assessment of Pulmonary Vessels in COPD [J].
Cao, Xianxian ;
Gao, Xiaoyan ;
Yu, Nan ;
Shi, Meijuan ;
Wei, Xia ;
Huang, Xiaoqi ;
Xu, Shudi ;
Pu, Jiantao ;
Jin, Chenwang ;
Guo, Youmin .
FRONTIERS IN MEDICINE, 2021, 8
[7]
Chen T, 2020, Arxiv, DOI arXiv:2002.05709
[8]
Classification of COPD with Multiple Instance Learning [J].
Cheplygina, Veronika ;
Sorensen, Lauge ;
Tax, David M. J. ;
Pedersen, Jesper Holst ;
Loog, Marco ;
de Bruijne, Marleen .
2014 22ND INTERNATIONAL CONFERENCE ON PATTERN RECOGNITION (ICPR), 2014, :1508-1513
[9]
Disease Staging and Prognosis in Smokers Using Deep Learning in Chest Computed Tomography [J].
Gonzalez, German ;
Ash, Samuel Y. ;
Vegas-Sanchez-Ferrero, Gonzalo ;
Onieva, Jorge Onieva ;
Rahaghi, Farbod N. ;
Ross, James C. ;
Diaz, Alejandro ;
Estepar, Raul San Jose ;
Washko, George R. .
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2018, 197 (02) :193-203
[10]
Ilse M, 2018, Arxiv, DOI [arXiv:1802.04712, DOI 10.48550/ARXIV.1802.04712, 10.48550/ARXIV.1802.04712, 10.48550/arXiv.1802.04712]