The structural basis of cephalosporin formation in a mononuclear ferrous enzyme

被引:71
作者
Valegård, K
van Scheltinga, ACT
Dubus, A
Ranghino, G
Öster, LM
Hajdu, J
Andersson, I
机构
[1] Uppsala Univ, Dept Cellular & Mol Biol, S-75124 Uppsala, Sweden
[2] Swedish Univ Agr Sci, Dept Mol Biosci, S-75124 Uppsala, Sweden
[3] Univ Liege, Inst Chim B6, Ctr Ingn Prot, B-4000 Liege, Belgium
[4] Ist Guido Donegani SpA, PolimeriEuropa, I-28100 Novara, Italy
关键词
D O I
10.1038/nsmb712
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Deacetoxycephalosporin-C synthase (DAOCS) is a mononuclear ferrous enzyme that transforms penicillins into cephalosporins by inserting a carbon atom into the penicillin nucleus. In the first half-reaction, dioxygen and 2-oxoglutarate produce a reactive iron-oxygen species, succinate and CO2. The oxidizing iron species subsequently reacts with penicillin to give cephalosporin and water. Here we describe high-resolution structures for ferrous DAOCS in complex with penicillins, the cephalosporin product, the cosubstrate and the coproduct. Steady-state kinetic data, quantum-chemical calculations and the new structures indicate a reaction sequence in which a 'booby-trapped' oxidizing species is formed. This species is stabilized by the negative charge of succinate on the iron. The binding sites of succinate and penicillin overlap, and when penicillin replaces succinate, it removes the stabilizing charge, eliciting oxidative attack on itself. Requisite groups of penicillin are within 1 Angstrom of the expected position of a ferryl oxygen in the enzyme-penicillin complex.
引用
收藏
页码:95 / 101
页数:7
相关论文
共 45 条
[11]   Structure of factor-inhibiting hypoxia-inducible factor (HIF) reveals mechanism of oxidative modification of HIF-1α [J].
Elkins, JM ;
Hewitson, KS ;
McNeill, LA ;
Seibel, JF ;
Schlemminger, I ;
Pugh, CW ;
Ratcliffe, PJ ;
Schofield, CJ .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (03) :1802-1806
[12]   X-ray crystal structure of Escherichia coli taurine/α-ketoglutarate dioxygenase complexed to ferrous iron and substrates [J].
Elkins, JM ;
Ryle, MJ ;
Clifton, IJ ;
Hotopp, JCD ;
Lloyd, JS ;
Burzlaff, NI ;
Baldwin, JE ;
Hausinger, RP ;
Roach, PL .
BIOCHEMISTRY, 2002, 41 (16) :5185-5192
[13]   An extensively modified version of MolScript that includes greatly enhanced coloring capabilities [J].
Esnouf, RM .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 1997, 15 (02) :132-+
[14]   Molray -: a web interface between O and the POV-Ray ray tracer [J].
Harris, M ;
Jones, TA .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2001, 57 :1201-1203
[15]   The 2-His-1-carboxylate facial triad - An emerging structural motif in mononuclear non-heme iron(II) enzymes [J].
Hegg, EL ;
Que, L .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1997, 250 (03) :625-629
[16]   β-secondary kinetic isotope effects in the clavaminate synthase-catalyzed oxidative cyclization of proclavaminic acid and in related azetidinone model reactions [J].
Iwata-Reuyl, D ;
Basak, A ;
Townsend, CA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (49) :11356-11368
[17]  
JONES TA, 1990, CRYSTALLOGRAPHIC MOD, P189
[18]   MOLSCRIPT - A PROGRAM TO PRODUCE BOTH DETAILED AND SCHEMATIC PLOTS OF PROTEIN STRUCTURES [J].
KRAULIS, PJ .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1991, 24 :946-950
[19]   Structure of human FIH-1 reveals a unique active site pocket and interaction sites for HIF-1 and von Hippel-Lindau [J].
Lee, C ;
Kim, SJ ;
Jeong, DG ;
Lee, SM ;
Ryu, SE .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (09) :7558-7563
[20]   Active site mutations of recombinant deacetoxycephalosporin C synthase [J].
Lee, HJ ;
Schofield, CJ ;
Lloyd, MD .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2002, 292 (01) :66-70