Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise

被引:61
作者
Birtwistle, Marc R. [1 ,2 ,3 ,4 ]
Rauch, Jens [3 ]
Kiyatkin, Anatoly [4 ]
Aksamitiene, Edita [4 ]
Dobrzynski, Maciej [3 ]
Hoek, Jan B. [4 ]
Kolch, Walter [3 ]
Ogunnaike, Babatunde A. [1 ]
Kholodenko, Boris N. [3 ,4 ]
机构
[1] Univ Delaware, Dept Chem & Biomol Engn, Newark, DE 19716 USA
[2] Mt Sinai Sch Med, Dept Pharmacol & Syst Therapeut, New York, NY 10029 USA
[3] Natl Univ Ireland Univ Coll Dublin, Dublin 4, Ireland
[4] Thomas Jefferson Univ, Dept Anat Pathol & Cell Biol, Philadelphia, PA 19107 USA
基金
爱尔兰科学基金会;
关键词
NEGATIVE FEEDBACK; GENE-EXPRESSION; POSITIVE FEEDBACK; DYNAMICS; ACTIVATION; SENSITIVITY; BISTABILITY; HYSTERESIS; MOLECULE; FOS;
D O I
10.1186/1752-0509-6-109
中图分类号
Q [生物科学];
学科分类号
090105 [作物生产系统与生态工程];
摘要
Background: Cell-to-cell variability in protein expression can be large, and its propagation through signaling networks affects biological outcomes. Here, we apply deterministic and probabilistic models and biochemical measurements to study how network topologies and cell-to-cell protein abundance variations interact to shape signaling responses. Results: We observe bimodal distributions of extracellular signal-regulated kinase (ERK) responses to epidermal growth factor (EGF) stimulation, which are generally thought to indicate bistable or ultrasensitive signaling behavior in single cells. Surprisingly, we find that a simple MAPK/ERK-cascade model with negative feedback that displays graded, analog ERK responses at a single cell level can explain the experimentally observed bimodality at the cell population level. Model analysis suggests that a conversion of graded input-output responses in single cells to digital responses at the population level is caused by a broad distribution of ERK pathway activation thresholds brought about by cell-to-cell variability in protein expression. Conclusions: Our results show that bimodal signaling response distributions do not necessarily imply digital (ultrasensitive or bistable) single cell signaling, and the interplay between protein expression noise and network topologies can bring about digital population responses from analog single cell dose responses. Thus, cells can retain the benefits of robustness arising from negative feedback, while simultaneously generating population-level on/off responses that are thought to be critical for regulating cell fate decisions.
引用
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页数:12
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