Quasispecies made simple

被引:132
作者
Bull, JJ
Meyers, LA
Lachmann, M [1 ]
机构
[1] Max Planck Inst Evolutionary Anthropol, Leipzig, Germany
[2] Univ Texas, Inst Cellular & Mol Biol, Sect Integrat Biol, Austin, TX 78712 USA
[3] Santa Fe Inst, Santa Fe, NM 87501 USA
关键词
D O I
10.1371/journal.pcbi.0010061
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Quasispecies are clouds of genotypes that appear in a population at mutation-selection balance. This concept has recently attracted the attention of virologists, because many RNA viruses appear to generate high levels of genetic variation that may enhance the evolution of drug resistance and immune escape. The literature on these important evolutionary processes is, however, quite challenging. Here we use simple models to link mutation-selection balance theory to the most novel property of quasispecies: the error threshold-a mutation rate below which populations equilibrate in a traditional mutation-selection balance and above which the population experiences an error catastrophe, that is, the loss of the favored genotype through frequent deleterious mutations. These models show that a single fitness landscape may contain multiple, hierarchically organized error thresholds and that an error threshold is affected by the extent of back mutation and redundancy in the genotype-to-phenotype map. Importantly, an error threshold is distinct from an extinction threshold, which is the complete loss of the population through lethal mutations. Based on this framework, we argue that the lethal mutagenesis of a viral infection by mutation-inducing drugs is not a true error catastophe, but is an extinction catastrophe.
引用
收藏
页码:450 / 460
页数:11
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共 44 条
  • [1] Ancel LW, 2000, J EXP ZOOL, V288, P242, DOI 10.1002/1097-010X(20001015)288:3<242::AID-JEZ5>3.0.CO
  • [2] 2-O
  • [3] Viral error catastrophe by mutagenic nucleosides
    Anderson, JP
    Daifuku, R
    Loeb, LA
    [J]. ANNUAL REVIEW OF MICROBIOLOGY, 2004, 58 : 183 - 205
  • [4] Viral quasi-species and recombination
    Boerlijst, MC
    Bonhoeffer, S
    Nowak, MA
    [J]. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 1996, 263 (1376) : 1577 - 1584
  • [5] Cross-functional analysis of the Microviridae internal scaffolding protein
    Burch, AD
    Ta, J
    Fane, BA
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1999, 286 (01) : 95 - 104
  • [6] Evolvability of an RNA virus is determined by its mutational neighbourhood
    Burch, CL
    Chao, L
    [J]. NATURE, 2000, 406 (6796) : 625 - 628
  • [7] MUTATION-SELECTION BALANCE AND THE EVOLUTIONARY ADVANTAGE OF SEX AND RECOMBINATION
    CHARLESWORTH, B
    [J]. GENETICS RESEARCH, 1990, 55 (03) : 199 - 221
  • [8] Inhibition of mutation and combating the evolution of antibiotic resistance
    Cirz, RT
    Chin, JK
    Andes, DR
    de Crécy-Lagard, V
    Craig, WA
    Romesberg, FE
    [J]. PLOS BIOLOGY, 2005, 3 (06) : 1024 - 1033
  • [9] Implications of high RNA virus mutation rates: lethal mutagenesis and the antiviral drug ribavirin
    Crotty, S
    Andino, R
    [J]. MICROBES AND INFECTION, 2002, 4 (13) : 1301 - 1307
  • [10] RNA virus error catastrophe: Direct molecular test by using ribavirin
    Crotty, S
    Cameron, CE
    Andino, R
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (12) : 6895 - 6900