Analysis of the sequence of Dioscorea alata bacilliform virus;: Comparison to other members of the badnavirus group

被引：38

作者：

Briddon, RW

Phillips, S

Brunt, A

Hull, R

机构：

[1] John Innes Ctr Plant Sci Res, Dept Virus Res, Norwich NR4 7UH, Norfolk, England

[2] Hort Res Int, Warwick CV35 9EF, England

来源：

VIRUS GENES | 1999年 / 18卷 / 03期

关键词：

badnavirus; Dioscorea alata; pararetrovirus; sequence;

D O I：

10.1023/A:1008076420783

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The complete nucleotide sequence of the genome of Dioscorea alata bacilliform virus (DaBV) has been determined from cloned fragments. Features of the genome confirm DaBV to be a pararetrovirus of the genus Badnavirus which is more similar to other mealy-bug transmitted badnaviruses, in particular to cacao swollen shoot virus, than to rice tungro bacilliform virus. Sequence variability between cloned fragments suggests that the genetic variability of the virus may be quite high (up to 11% nucleotide sequence variation for some small regions of the genome) although the overall variability detected was 4.2% at the nucleotide level.

引用

页码：277 / 283

页数：7

共 26 条

[1] A FAST, SIMPLE, AND EFFICIENT MINISCALE METHOD FOR THE PREPARATION OF DNA FROM TISSUES OF YAM (DIOSCOREA SPP) [J].

ASEMOTA, HN .

PLANT MOLECULAR BIOLOGY REPORTER, 1995, 13 (03) :214-218

[2] BUFFER GRADIENT GELS AND S-35 LABEL AS AN AID TO RAPID DNA-SEQUENCE DETERMINATION [J].

BIGGIN, MD ;

GIBSON, TJ ;

HONG, GF .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1983, 80 (13) :3963-3965

[3] AN ANALYSIS OF THE COMPLETE SEQUENCE OF A SUGARCANE BACILLIFORM VIRUS GENOME INFECTIOUS TO BANANA AND RICE [J].

BOUHIDA, M ;

LOCKHART, BEL ;

OLSZEWSKI, NE .

JOURNAL OF GENERAL VIROLOGY, 1993, 74 :15-22

[4] RAPID PRODUCTION OF FULL-LENGTH, INFECTIOUS GEMINIVIRUS CLONES BY ABUTTING PRIMER PCR (ABP-PCR) [J].

BRIDDON, RW ;

PRESCOTT, AG ;

LUNNESS, P ;

CHAMBERLIN, LCL ;

MARKHAM, PG .

JOURNAL OF VIROLOGICAL METHODS, 1993, 43 (01) :7-20

[5]

BRUNT AA, 1989, FAOIBPGR TECHNICAL G

[6] PATTERNS OF NUCLEOTIDE-SEQUENCE VARIATION AMONG CAULIFLOWER MOSAIC-VIRUS ISOLATES [J].

CHENAULT, KD ;

MELCHER, U .

BIOCHIMIE, 1994, 76 (01) :3-8

[7] The ORF I and II proteins of Commelina yellow mottle virus are virion-associated [J].

Cheng, CP ;

Lockhart, BEL ;

Olszewski, NE .

VIROLOGY, 1996, 223 (02) :263-271

[8]

Coursey DG, 1967, Yams

[9] A COMPREHENSIVE SET OF SEQUENCE-ANALYSIS PROGRAMS FOR THE VAX [J].

DEVEREUX, J ;

HAEBERLI, P ;

SMITHIES, O .

NUCLEIC ACIDS RESEARCH, 1984, 12 (01) :387-395

[10] NUCLEOTIDE-SEQUENCE AND GENOMIC ORGANIZATION OF CACAO SWOLLEN SHOOT VIRUS [J].

HAGEN, LS ;

JACQUEMOND, M ;

LEPINGLE, A ;

LOT, H ;

TEPFER, M .

VIROLOGY, 1993, 196 (02) :619-628

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