Combined crystal structure prediction and high-pressure crystallization in rational pharmaceutical polymorph screening

被引:201
作者
Neumann, M. A. [1 ]
de Streek, J. van [2 ]
Fabbiani, F. P. A. [3 ]
Hidber, P. [4 ]
Grassmann, O. [5 ]
机构
[1] Avant Garde Mat Simulat Deutschland GmbH, Merzhauser Str 177, D-79100 Freiburg, Germany
[2] Univ Copenhagen, Dept Pharm, DK-2100 Copenhagen, Denmark
[3] Univ Gottingen, Dept Crystallog, D-37077 Gottingen, Germany
[4] F Hoffmann La Roche Ltd, Pharma Tech Dev, CH-4070 Basel, Switzerland
[5] F Hoffmann La Roche Ltd, Roche Innovat Ctr Basel, Roche Pharmaceut Res & Early Dev, CH-4070 Basel, Switzerland
来源
NATURE COMMUNICATIONS | 2015年 / 6卷
关键词
TOTAL-ENERGY CALCULATIONS; SMALL ORGANIC-MOLECULES; BLIND TEST; FORM; LANDSCAPE; DYNAMICS; DISORDER; PROGRESS;
D O I
10.1038/ncomms8793
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Organic molecules, such as pharmaceuticals, agro-chemicals and pigments, frequently form several crystal polymorphs with different physicochemical properties. Finding polymorphs has long been a purely experimental game of trial-and-error. Here we utilize in silico polymorph screening in combination with rationally planned crystallization experiments to study the polymorphism of the pharmaceutical compound Dalcetrapib, with 10 torsional degrees of freedom one of the most flexible molecules ever studied computationally. The experimental crystal polymorphs are found at the bottom of the calculated lattice energy landscape, and two predicted structures are identified as candidates for a missing, thermodynamically more stable polymorph. Pressure-dependent stability calculations suggested high pressure as a means to bring these polymorphs into existence. Subsequently, one of them could indeed be crystallized in the 0.02 to 0.50 GPa pressure range and was found to be metastable at ambient pressure, effectively derisking the appearance of a more stable polymorph during late-stage development of Dalcetrapib.
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页数:7
相关论文
共 59 条
[1]   Current Computational Approaches to Support Pharmaceutical Solid Form Selection [J].
Abramov, Yuriy A. .
ORGANIC PROCESS RESEARCH & DEVELOPMENT, 2013, 17 (03) :472-485
[2]   Towards crystal structure prediction of complex organic compounds - a report on the fifth blind test [J].
Bardwell, David A. ;
Adjiman, Claire S. ;
Arnautova, Yelena A. ;
Bartashevich, Ekaterina ;
Boerrigter, Stephan X. M. ;
Braun, Doris E. ;
Cruz-Cabeza, Aurora J. ;
Day, Graeme M. ;
Della Valle, Raffaele G. ;
Desiraju, Gautam R. ;
van Eijck, Bouke P. ;
Facelli, Julio C. ;
Ferraro, Marta B. ;
Grillo, Damian ;
Habgood, Matthew ;
Hofmann, Detlef W. M. ;
Hofmann, Fridolin ;
Jose, K. V. Jovan ;
Karamertzanis, Panagiotis G. ;
Kazantsev, Andrei V. ;
Kendrick, John ;
Kuleshova, Liudmila N. ;
Leusen, Frank J. J. ;
Maleev, Andrey V. ;
Misquitta, Alston J. ;
Mohamed, Sharmarke ;
Needs, Richard J. ;
Neumann, Marcus A. ;
Nikylov, Denis ;
Orendt, Anita M. ;
Pal, Rumpa ;
Pantelides, Constantinos C. ;
Pickard, Chris J. ;
Price, Louise S. ;
Price, Sarah L. ;
Scheraga, Harold A. ;
van de Streek, Jacco ;
Thakur, Tejender S. ;
Tiwari, Siddharth ;
Venuti, Elisabetta ;
Zhitkov, Ilia K. .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE CRYSTAL ENGINEERING AND MATERIALS, 2011, 67 :535-551
[3]   Ritonavir: An extraordinary example of conformational polymorphism [J].
Bauer, J ;
Spanton, S ;
Henry, R ;
Quick, J ;
Dziki, W ;
Porter, W ;
Morris, J .
PHARMACEUTICAL RESEARCH, 2001, 18 (06) :859-866
[4]  
Bernstein J., 2020, Polymorphism in molecular crystals 2e, Vvol. 30
[5]   Exploring the Experimental and Computed Crystal Energy Landscape of Olanzapine [J].
Bhardwaj, Rajni M. ;
Price, Louise S. ;
Price, Sarah L. ;
Reutzel-Edens, Susan M. ;
Miller, Gary J. ;
Oswald, Iain D. H. ;
Johnston, Blair F. ;
Florence, Alastair J. .
CRYSTAL GROWTH & DESIGN, 2013, 13 (04) :1602-1617
[6]   High-pressure polymorphs of molecular solids: When are they formed, and when are they not? Some examples of the role of kinetic control [J].
Boldyreva, Elena .
CRYSTAL GROWTH & DESIGN, 2007, 7 (09) :1662-1668
[7]   Contrasting Polymorphism of Related Small Molecule Drugs Correlated and Guided by the Computed Crystal Energy Landscape [J].
Braun, Doris E. ;
McMahon, Jennifer A. ;
Koztecki, Lien H. ;
Price, Sarah L. ;
Reutzel-Edens, Susan M. .
CRYSTAL GROWTH & DESIGN, 2014, 14 (04) :2056-2072
[8]   The curious case of (caffeine)•(benzoic acid): how heteronuclear seeding allowed the formation of an elusive cocrystal [J].
Bucar, Dejan-Kresimir ;
Day, Graeme M. ;
Halasz, Ivan ;
Zhang, Geoff G. Z. ;
Sander, John R. G. ;
Reid, David G. ;
MacGillivray, Leonard R. ;
Duer, Melinda J. ;
Jones, William .
CHEMICAL SCIENCE, 2013, 4 (12) :4417-4425
[9]   Polymorphic control by heterogeneous nucleation - A new method for selecting crystalline substrates [J].
Chadwick, Keith ;
Myerson, Allan ;
Trout, Bernhardt .
CRYSTENGCOMM, 2011, 13 (22) :6625-6627
[10]   Structure prediction, disorder and dynamics in a DMSO solvate of carbamazepine [J].
Cruz-Cabeza, Aurora J. ;
Day, Graeme M. ;
Jones, William .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2011, 13 (28) :12808-12816