Structural information for explaining the molecular mechanism of protein biosynthesis

被引:20
作者
Clark, BFC [1 ]
Thirup, S [1 ]
Kjeldgaard, M [1 ]
Nyborg, J [1 ]
机构
[1] Aarhus Univ, Inst Mol & Struct Biol, DK-8000 Aarhus, Denmark
关键词
protein biosynthesis; RNA world; macromolecular mimicry; protein evolution; elongation factor; translation factor; structure determination; crystallography; electron cryo-microscopy;
D O I
10.1016/S0014-5793(99)00562-1
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Protein biosynthesis is controlled by a number of proteins external to the ribosome, Of these, extensive structural investigations have been performed on elongation factor-Tu and elongation factor-G, This now gives a rather complete structural picture of the functional cycle of elongation factor-Tu and especially of the elongation phase of protein biosynthesis. The discovery that three domains of elongation factor-G are structurally mimicking the amino-acylated tRNA in the ternary complex of elongation factor-Tu has been the basis of much discussion of the functional similarities and functional differences of elongation factor-Tn and elongation factor-G in their interactions with the ribosome, Elongation factor-G:GDP is nom thought to leave the ribosome in a state ready for checking the codon-anticodon interaction of the aminoacyl-tRNA contained in the ternary complex of elongation factor-Tn. Elongation factor-G does this by mimicking the shape of the ternary complex. Other translation factors such as the initiation factor-2 and the release factor 1 or 2 are also thought to mimic tRNA. These observations raise questions concerning the possible evolution of G-proteins involved in protein biosynthesis, (C) 1999 Federation of European Biochemical Societies.
引用
收藏
页码:41 / 46
页数:6
相关论文
共 56 条
[1]   An alpha to beta conformational switch in EF-Tu [J].
Abel, K ;
Yoder, MD ;
Hilgenfeld, R ;
Jurnak, F .
STRUCTURE, 1996, 4 (10) :1153-1159
[2]   A complex profile of protein elongation: Translating chemical energy into molecular movement [J].
Abel, K ;
Jurnak, F .
STRUCTURE, 1996, 4 (03) :229-238
[3]  
Aevarsson A, 1995, J MOL EVOL, V41, P1096
[4]   3-DIMENSIONAL STRUCTURE OF THE RIBOSOMAL TRANSLOCASE - ELONGATION-FACTOR-G FROM THERMUS-THERMOPHILUS [J].
AEVARSSON, A ;
BRAZHNIKOV, E ;
GARBER, M ;
ZHELTONOSOVA, J ;
CHIRGADZE, Y ;
AL-KARADAGHI, S ;
SVENSSON, LA ;
LILJAS, A .
EMBO JOURNAL, 1994, 13 (16) :3669-3677
[5]   Direct visualization of A-, P-, and E-site transfer RNAs in the Escherichia coli ribosome [J].
Agrawal, RK ;
Penczek, P ;
Grassucci, RA ;
Li, YH ;
Leith, A ;
Nierhaus, KH ;
Frank, J .
SCIENCE, 1996, 271 (5251) :1000-1002
[6]   Visualization of elongation factor G on the Escherichia coli 70S ribosome:: The mechanism of translocation [J].
Agrawal, RK ;
Penczek, P ;
Grassucci, RA ;
Frank, J .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (11) :6134-6138
[7]   The structure of elongation factor G in complex with GDP: Conformational flexibility and nucleotide exchange [J].
Al-Karadaghi, S ;
AEvarsson, A ;
Garber, M ;
Zheltonosova, J ;
Liljas, A .
STRUCTURE, 1996, 4 (05) :555-565
[8]   A 9Å resolution x-ray crystallographic map of the large ribosomal subunit [J].
Ban, N ;
Freeborn, B ;
Nissen, P ;
Penczek, P ;
Grassucci, RA ;
Sweet, R ;
Frank, J ;
Moore, PB ;
Steitz, TA .
CELL, 1998, 93 (07) :1105-1115
[9]   CRYSTAL-STRUCTURE OF ACTIVE ELONGATION-FACTOR TU REVEALS MAJOR DOMAIN REARRANGEMENTS [J].
BERCHTOLD, H ;
RESHETNIKOVA, L ;
REISER, COA ;
SCHIRMER, NK ;
SPRINZL, M ;
HILGENFELD, R .
NATURE, 1993, 365 (6442) :126-132
[10]   Solution structure of the ternary complex between aminoacyl-tRNA, elongation factor Tu, and guanosine triphosphate [J].
Bilgin, N ;
Ehrenberg, M ;
Ebel, C ;
Zaccai, G ;
Sayers, Z ;
Koch, MHJ ;
Svergun, DI ;
Barberato, C ;
Volkov, V ;
Nissen, P ;
Nyborg, J .
BIOCHEMISTRY, 1998, 37 (22) :8163-8172