The physiological role of the ribulose monophosphate pathway in bacteria and archaea

被引:110
作者
Kato, N
Yurimoto, H
Thauer, RK
机构
[1] Max Planck Inst Terr Mikrobiol, D-35043 Marburg, Germany
[2] Kyoto Univ, Div Appl Life Sci, Grad Sch Agr, Sakyo Ku, Kyoto 6068502, Japan
关键词
ribulose monophosphate pathway; methyl-otrophic bacteria; formaldehyde fixation; orotidine 5 '-monophosphate decarboxylase (OMPDC) suprafamily; pentose phosphate synthesis;
D O I
10.1271/bbb.70.10
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
3-Hexulose-6-phosphate synthase (HPS) and 6-phospho-3-hexuloisomerase (PHI) are the key enzymes of the ribulose monophosphate pathway. This pathway, which was originally found in methylotrophic bacteria, is now recognized as a widespread prokaryotic pathway involved in formaldehyde fixation and detoxification. Recent progress, involving biochemical and genetic approaches in elucidating the physiological functions of HPS and PHI in methylotrophic as well as nonmethylotrophic bacteria are described in this review. HPS and PHI orthologs are also found in a variety of archaeal strains. Some archaeal HPS orthologs are fused with other genes to form single ORF (e.g., the hps-phi gene of pyrococcus spp. and the faeB-hpsB gene of Methanosarcina spp). These fused gene products exhibit functions corresponding to the individual enzyme activities, and are more efficient than equivalent systems made up of discrete enzymes. Recently, a novel metabolic function for HPS and PHI has been proposed in which these enzymes catalyze the reverse reaction for the biosynthesis of pentose phosphate in some archaeal strains. Thus the enzyme system plays a different role in bacteria and archaea by catalyzing the forward and reverse reactions respectively.
引用
收藏
页码:10 / 21
页数:12
相关论文
共 37 条
[1]   Methane-related carbonates formed at submarine hydrothermal springs: a new setting for microbially-derived carbonates? [J].
Canet, C ;
Prol-Ledesma, RM ;
Melgarejo, JC ;
Reyes, A .
MARINE GEOLOGY, 2003, 199 (3-4) :245-261
[2]   C1 transfer enzymes and coenzymes linking methylotrophic bacteria and methanogenic Archaea [J].
Chistoserdova, L ;
Vorholt, JA ;
Thauer, RK ;
Lidstrom, ME .
SCIENCE, 1998, 281 (5373) :99-102
[3]   Fate of vent-derived methane in seawater above the Hakon Mosby mud volcano (Norwegian Sea) [J].
Damm, E ;
Budéus, G .
MARINE CHEMISTRY, 2003, 82 (1-2) :1-11
[4]  
Dijkhuizen L., 1992, V5, P149
[5]   PURIFICATION AND PROPERTIES OF 3-HEXULOSE PHOSPHATE SYNTHASE AND PHOSPHO-3-HEXULOISOMERASE FROM METHYLOCOCCUS-CAPSULATUS [J].
FERENCI, T ;
STROM, T ;
QUAYLE, JR .
BIOCHEMICAL JOURNAL, 1974, 144 (03) :477-486
[6]   Evolution of function in (β/α)8-barrel enzymes [J].
Gerlt, JA ;
Raushel, FM .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2003, 7 (02) :252-264
[7]   Formaldehyde activating enzyme (Fae) and hexulose-6-phosphate synthase (Hps) in Methanosarcina barkeri:: a possible function in ribose-5-phosphate biosynthesis [J].
Goenrich, M ;
Thauer, RK ;
Yurimoto, H ;
Kato, N .
ARCHIVES OF MICROBIOLOGY, 2005, 184 (01) :41-48
[8]   Pyrococcus horikoshii sp. nov., a hyperthermophilic archaeon isolated from a hydrothermal vent at the Okinawa Trough [J].
Gonzalez, JM ;
Masuchi, Y ;
Robb, FT ;
Ammerman, JW ;
Maeder, DL ;
Yanagibayashi, M ;
Tamaoka, J ;
Kato, C .
EXTREMOPHILES, 1998, 2 (02) :123-130
[9]   Formaldehyde ferredoxin oxidoreductase from Pyrococcus furiosus:: The 1.85 Å resolution crystal structure and its mechanistic implications [J].
Hu, YL ;
Faham, S ;
Roy, R ;
Adams, MWW ;
Rees, DC .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 286 (03) :899-914
[10]   HEXOSE PHOSPHATE SYNTHASE FROM METHYLOCOCCUS-CAPSULATUS MAKES D-ARABINO-3-HEXULOSE PHOSPHATE [J].
KEMP, MB .
BIOCHEMICAL JOURNAL, 1974, 139 (01) :129-134