GeneNet: a database on structure and functional organisation of gene networks

被引：23

作者：

Ananko, EA ^{[1
]}

Podkolodny, NL ^{[1
]}

Stepanenko, IL ^{[1
]}

Ignatieva, EV ^{[1
]}

Podkolodnaya, OA ^{[1
]}

Kolchanov, NA ^{[1
]}

机构：

[1] Russian Acad Sci, Inst Cytol & Genet, Siberian Branch, Novosibirsk 630090, Russia

来源：

NUCLEIC ACIDS RESEARCH | 2002年 / 30卷 / 01期

关键词：

D O I：

10.1093/nar/30.1.398

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The GeneNet database is designed for accumulation of information on gene networks. Original technology applied in GeneNet enables description of not only a gene network structure and functional relationships between components, but also metabolic and signal transduction pathways. Specialised software, GeneNet Viewer, automatically displays the graphical diagram of gene networks described in the database. Current release 3.0 of GeneNet database contains descriptions of 25 gene networks, 945 proteins, 567 genes, 151 other substances and 1364 relationships between components of gene networks. Information distributed between 14 interlinked tables was obtained by annotating 968 scientific publications. The SRS-version of GeneNet database is freely available (http://wwwmgs.bionet.nsc.ru/mgs/systems/genenet/).

引用

页码：398 / 401

页数：4

共 8 条

[1] The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 [J].

Bairoch, A ;

Apweiler, R .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :45-48

[2] Gene networks [J].

Kolchanov, NA ;

Anan'ko, EA ;

Kolpakov, FA ;

Podkolodnaya, OA ;

Ignat'eva, EV ;

Goryachkovskaya, TN ;

Stepanenko, IL .

MOLECULAR BIOLOGY, 2000, 34 (04) :449-460

[3] Transcription regulatory regions database (TRRD): its status in 2000 [J].

Kolchanov, NA ;

Podkolodnaya, OA ;

Ananko, EA ;

Ignatieva, EV ;

Stepanenko, IL ;

Kel-Margoulis, OV ;

Kel, AE ;

Merkulova, TI ;

Goryachkovskaya, TN ;

Busygina, TV ;

Kolpakov, FA ;

Podkolodny, NL ;

Naumochkin, AN ;

Korostishevskaya, IM ;

Romashchenko, AG ;

Overton, GC .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :298-301

[4] Transcription Regulatory Regions Database (TRRD): its status in 2002 [J].

Kolchanov, NA ;

Ignatieva, EV ;

Ananko, EA ;

Podkolodnaya, OA ;

Stepanenko, IL ;

Merkulova, TI ;

Pozdnyakov, MA ;

Podkolodny, NL ;

Naumochkin, AN ;

Romashchenko, AG .

NUCLEIC ACIDS RESEARCH, 2002, 30 (01) :312-317

[5] GeneNet: a gene network database and its automated visualization [J].

Kolpakov, FA ;

Ananko, EA ;

Kolesov, GB ;

Kolchanov, NA .

BIOINFORMATICS, 1998, 14 (06) :529-537

[6] The EMBL Nucleotide Sequence Database [J].

Stoesser, G ;

Baker, W ;

van den Broek, A ;

Camon, E ;

Garcia-Pastor, M ;

Kanz, C ;

Kulikova, T ;

Leinonen, R ;

Lin, Q ;

Lombard, V ;

Lopez, R ;

Redaschi, N ;

Stoehr, P ;

Tuli, MA ;

Tzouvara, K ;

Vaughan, R .

NUCLEIC ACIDS RESEARCH, 2002, 30 (01) :21-26

[7] The EMBL nucleotide sequence database [J].

Stoesser, G ;

Baker, W ;

van den Broek, A ;

Camon, E ;

Garcia-Pastor, M ;

Kanz, C ;

Kulikova, T ;

Lombard, V ;

Lopez, R ;

Parkinson, H ;

Redaschi, N ;

Sterk, P ;

Stoehr, P ;

Tuli, MA .

NUCLEIC ACIDS RESEARCH, 2001, 29 (01) :17-21

[8] The TRANSFAC system on gene expression regulation [J].

Wingender, E ;

Chen, X ;

Fricke, E ;

Geffers, R ;

Hehl, R ;

Liebich, I ;

Krull, M ;

Matys, V ;

Michael, H ;

Ohnhäuser, R ;

Prüss, M ;

Schacherer, F ;

Thiele, S ;

Urbach, S .

NUCLEIC ACIDS RESEARCH, 2001, 29 (01) :281-283

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