BioJava']Java:: an open-source framework for bioinformatics

被引：145

作者：

Holland, R. C. G. ^{[2
]}

Down, T. A. ^{[4
,5
]}

Pocock, M. ^{[3
]}

Prlic, A. ^{[1
]}

Huen, D. ^{[6
]}

James, K. ^{[1
]}

Foisy, S. ^{[7
]}

Draeger, A. ^{[8
]}

Yates, A. ^{[2
]}

Heuer, M. ^{[9
]}

Schreiber, M. J. ^{[10
]}

机构：

[1] Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

[2] European Bioinformat Inst EMBL EBI, Hinxton CB10 1SD, Cambs, England

[3] Univ Newcastle Upon Tyne, Newcastle Upon Tyne NE1 7RU, Tyne & Wear, England

[4] Gurdon Inst, Cambridge CB2 1QN, England

[5] Dept Genet, Cambridge CB2 1QN, England

[6] Univ Cambridge, Dept Genet, Cambridge CB2 3EH, England

[7] Montreal Heart Inst, Lab Genet & Genom Med Inflammat, Montreal, PQ H1T 1C8, Canada

[8] Univ Tubingen, Ctr Bioinformat ZBIT, Tubingen, Germany

[9] Harbinger Partners Inc, St Paul, MN USA

[10] Novartis Inst Trop Dis, Singapore 138670, Singapore

来源：

BIOINFORMATICS | 2008年 / 24卷 / 18期

基金：

英国惠康基金;

关键词：

D O I：

10.1093/bioinformatics/btn397

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

BioJava is a mature open-source project that provides a framework for processing of biological data. BioJava contains powerful analysis and statistical routines, tools for parsing common file formats and packages for manipulating sequences and 3D structures. It enables rapid bioinformatics application development in the Java programming language.

引用

页码：2096 / 2097

页数：2

共 8 条

[1] ALTSCHUL SF, 1997, NUCLEIC ACIDS RES, V25, P3402
[2] The Protein Data Bank
Berman, HM
Westbrook, J
Feng, Z
Gilliland, G
Bhat, TN
Weissig, H
Shindyalov, IN
Bourne, PE
[J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 235 - 242
[3] Base-calling of automated sequencer traces using phred.: I.: Accuracy assessment
Ewing, B
Hillier, L
Wendl, MC
Green, P
[J]. GENOME RESEARCH, 1998, 8 (03): : 175 - 185
[4] Nexus: An extensible file format for systematic information
Maddison, DR
Swofford, DL
Maddison, WP
[J]. SYSTEMATIC BIOLOGY, 1997, 46 (04) : 590 - 621
[5] MANGALAM H, 2002, BRIEF BIOINFORM, V3, P396
[6] POCOCK M, 2000, ACM SIGBIO NEWSLETTE, V20, P10
[7] POCOCK M, 2003, THESIS U CAMBRIDGE C
[8] The bioperl toolkit:: Perl modules for the life sciences
Stajich, JE
Block, D
Boulez, K
Brenner, SE
Chervitz, SA
Dagdigian, C
Fuellen, G
Gilbert, JGR
Korf, I
Lapp, H
Lehväslaiho, H
Matsalla, C
Mungall, CJ
Osborne, BI
Pocock, MR
Schattner, P
Senger, M
Stein, LD
Stupka, E
Wilkinson, MD
Birney, E
[J]. GENOME RESEARCH, 2002, 12 (10) : 1611 - 1618

← 1 →