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Computation and Functional Studies Provide a Model for the Structure of the Zinc Transporter hZIP4
被引:55
作者:
Antala, Sagar
[2
]
Ovchinnikov, Sergey
[3
,4
,5
]
Kamisetty, Hetunandan
[3
,4
]
Baker, David
[3
,4
]
Dempski, Robert E.
[1
,2
]
机构:
[1] Worcester Polytech Inst, Dept Chem & Biochem, Worcester, MA 01609 USA
[2] Worcester Polytech Inst, Dept Chem & Biochem, Worcester, MA 01609 USA
[3] Univ Washington, Howard Hughes Med Inst, Seattle, WA 98195 USA
[4] Univ Washington, Dept Biochem, Seattle, WA 98195 USA
[5] Univ Washington, Mol & Cellular Biol Program, Seattle, WA 98195 USA
基金:
美国国家卫生研究院;
关键词:
MAJOR FACILITATOR SUPERFAMILY;
MIX-AND-MATCH;
ACRODERMATITIS-ENTEROPATHICA;
ESCHERICHIA-COLI;
STRUCTURE PREDICTION;
PROTEIN STRUCTURES;
MFS TRANSPORTERS;
ZNT TRANSPORTERS;
BINDING;
SEQUENCE;
D O I:
10.1074/jbc.M114.617613
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
Members of the Zrt and Irt protein (ZIP) family are a central participant in transition metal homeostasis as they function to increase the cytosolic concentration of zinc and/or iron. However, the lack of a crystal structure hinders elucidation of the molecular mechanism of ZIP proteins. Here, we employed GREMLIN, a co-evolution-based contact prediction approach in conjunction with the Rosetta structure prediction program to construct a structural model of the human (h) ZIP4 transporter. The predicted contact data are best fit by modeling hZIP4 as a dimer. Mutagenesis of residues that comprise a central putative hZIP4 transmembrane transition metal coordination site in the structural model alter the kinetics and specificity of hZIP4. Comparison of the hZIP4 dimer model to all known membrane protein structures identifies the 12-transmembrane monomeric Piriformospora indica phosphate transporter (PiPT), a member of the major facilitator superfamily (MFS), as a likely structural homolog.
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页码:17796 / 17805
页数:10
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