Three-dimensional structure of the Hck SH2 domain in solution

被引:18
作者
Zhang, WX [1 ]
Smithgall, TE [1 ]
Gmeiner, WH [1 ]
机构
[1] UNIV NEBRASKA, MED CTR, EPPLEY INST RES CANC & ALLIED DIS, OMAHA, NE 68198 USA
关键词
signal transduction; NOE reference; improved pulse sequence; J-coupling; stereospecific resonance assignment;
D O I
10.1023/A:1018386217930
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The hematopoietic cellular kinase (Hck) is a member of the Src family of non-receptor protein-tyrosine kinases that is expressed predominantly in granulocytes, monocytes and macrophages. Recent observations suggest that Hck may be activated in HIV-infected macrophages and in chronic myelogenous leukemia cells that express Bcr-Abl. In order to increase our understanding of the structural basis for regulation of Hck activity under normal and pathological conditions, we have solved the solution structure of the uncomplexed Hck SH2 domain using NMR spectroscopy. A novel procedure that uses intraresidue H-N-H-alpha distances as references for converting NOE intensities into distance restraints has been described. A total of 1757 significant experimental restraints were derived from NMR spectroscopic data including 238 medium-range and 487 long-range distance restraints and 177 torsion angle restraints. These restraints were used in a simulated annealing procedure to generate 20 structures with the program DYANA. Superimposition of residues 5-104 upon the mean coordinate set yielded an average atomic rmsd values of 0.42+/-0.08 Angstrom for the N,C-alpha,C' atoms and 0.81+/-0.08 Angstrom for all heavy atoms. Rmsd values for those residues in the regions of ordered secondary structure were 0.27+/-0.04 Angstrom for the N,C-alpha,C' atoms and 0.73+/-0.06 Angstrom for all heavy atoms.
引用
收藏
页码:263 / 272
页数:10
相关论文
共 61 条
[1]   AN ALTERNATIVE 3D-NMR TECHNIQUE FOR CORRELATING BACKBONE N-15 WITH SIDE-CHAIN H-BETA-RESONANCES IN LARGER PROTEINS [J].
ARCHER, SJ ;
IKURA, M ;
TORCHIA, DA ;
BAX, A .
JOURNAL OF MAGNETIC RESONANCE, 1991, 95 (03) :636-641
[2]   PRACTICAL ASPECTS OF PROTON CARBON CARBON PROTON 3-DIMENSIONAL CORRELATION SPECTROSCOPY OF C-13-LABELED PROTEINS [J].
BAX, A ;
CLORE, GM ;
DRISCOLL, PC ;
GRONENBORN, AM ;
IKURA, M ;
KAY, LE .
JOURNAL OF MAGNETIC RESONANCE, 1990, 87 (03) :620-627
[3]   RESONANCE ASSIGNMENT OF METHIONINE METHYL-GROUPS AND CHI(3) ANGULAR INFORMATION FROM LONG-RANGE PROTON-CARBON AND CARBON-CARBON J-CORRELATION IN A CALMODULIN PEPTIDE COMPLEX [J].
BAX, A ;
DELAGLIO, F ;
GRZESIEK, S ;
VUISTER, GW .
JOURNAL OF BIOMOLECULAR NMR, 1994, 4 (06) :787-797
[4]   UROKINASE PLASMINOGEN-ACTIVATOR RECEPTOR, BETA-2-INTEGRINS, AND SRC-KINASES WITHIN A SINGLE RECEPTOR COMPLEX OF HUMAN MONOCYTES [J].
BOHUSLAV, J ;
HOREJSI, V ;
HANSMANN, C ;
STOCKL, J ;
WEIDLE, UH ;
MAJDIC, O ;
BARTKE, I ;
KNAPP, W ;
STOCKINGER, H .
JOURNAL OF EXPERIMENTAL MEDICINE, 1995, 181 (04) :1381-1390
[5]  
BOULET I, 1992, ONCOGENE, V7, P703
[6]   SH3-mediated Hck tyrosine kinase activation and fibroblast transformation by the Nef protein of HIV-1 [J].
Briggs, SD ;
Sharkey, M ;
Stevenson, M ;
Smithgall, TE .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1997, 272 (29) :17899-17902
[7]   Regulation, substrates and functions of src [J].
Brown, MT ;
Cooper, JA .
BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER, 1996, 1287 (2-3) :121-149
[8]  
CLORE GM, 1993, NMR PROTEINS, P1
[9]  
DanhauserRiedl S, 1996, CANCER RES, V56, P3589
[10]   NMRPIPE - A MULTIDIMENSIONAL SPECTRAL PROCESSING SYSTEM BASED ON UNIX PIPES [J].
DELAGLIO, F ;
GRZESIEK, S ;
VUISTER, GW ;
ZHU, G ;
PFEIFER, J ;
BAX, A .
JOURNAL OF BIOMOLECULAR NMR, 1995, 6 (03) :277-293