DEPT spectral editing in HCCONH-type experiments. Application to fast protein backbone and side chain assignment

被引:10
作者
Brutscher, B [1 ]
机构
[1] UJF, CEA, CNRS, UMR 5075,Inst Biol Struct Jean Pierre Ebel, F-38027 Grenoble 1, France
关键词
NMR; protein; reduced dimensionality; GFT; DEPT; spectral editing; resonance assignment;
D O I
10.1016/j.jmr.2003.12.010
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
2D DEPT-(HCalpha,beta)-C-alpha,beta(CO)NH and 2D CT-DEPT-HC(CO)NH-TOCSY experiments are presented which allow fast resonance assignment of aliphatic protein side chains. In these 2D reduced-dimensionality experiments, two or three nuclei are frequency labeled in the indirect dimension. DEPT spectral editing reduces the number of correlation peaks detected in each 2D spectrum, and helps in amino-acid-type determination during sequential backbone resonance assignment. Applications are shown for a small 68-residue, and a highly deuterated 167-residue protein. The new experiments complement the set of 2D HNX correlation experiments, previously proposed for fast protein resonance assignment. (C) 2003 Elsevier Inc. All rights reserved.
引用
收藏
页码:178 / 184
页数:7
相关论文
共 36 条
  • [21] Editing and diagonal peak suppression in three-dimensional HCCH protein NMR correlation experiments
    Meissner, A
    Sorensen, OW
    [J]. JOURNAL OF BIOMOLECULAR NMR, 2001, 19 (01) : 69 - 73
  • [22] MILLET O, 2002, J AM CHEM SOC, V124, P4556
  • [23] AN EFFICIENT TRIPLE RESONANCE EXPERIMENT USING C-13 ISOTROPIC MIXING FOR DETERMINING SEQUENCE-SPECIFIC RESONANCE ASSIGNMENTS OF ISOTOPICALLY-ENRICHED PROTEINS
    MONTELIONE, GT
    LYONS, BA
    EMERSON, SD
    TASHIRO, M
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1992, 114 (27) : 10974 - 10975
  • [24] An approach to the structure determination of larger proteins using triple resonance NMR experiments in conjunction with random fractional deuteration
    Nietlispach, D
    Clowes, RT
    Broadhurst, RW
    Ito, Y
    Keeler, J
    Kelly, M
    Ashurst, J
    Oschkinat, H
    Domaille, PJ
    Laue, ED
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1996, 118 (02) : 407 - 415
  • [25] SENSITIVITY IMPROVEMENT IN PROTON-DETECTED 2-DIMENSIONAL HETERONUCLEAR CORRELATION NMR-SPECTROSCOPY
    PALMER, AG
    CAVANAGH, J
    WRIGHT, PE
    RANCE, M
    [J]. JOURNAL OF MAGNETIC RESONANCE, 1991, 93 (01) : 151 - 170
  • [26] PROTON-POLARIZATION TRANSFER ENHANCEMENT OF A HETERONUCLEAR SPIN MULTIPLET WITH PRESERVATION OF PHASE COHERENCY AND RELATIVE COMPONENT INTENSITIES
    PEGG, DT
    DODDRELL, DM
    BENDALL, MR
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1982, 77 (06) : 2745 - 2752
  • [27] Selective methyl group protonation of perdeuterated proteins
    Rosen, MK
    Gardner, KH
    Willis, RC
    Parris, WE
    Pawson, T
    Kay, LE
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1996, 263 (05) : 627 - 636
  • [28] ROSSY E, IN PRESS J BIOL INOR
  • [29] ITERATIVE SCHEMES FOR BILINEAR OPERATORS - APPLICATION TO SPIN DECOUPLING
    SHAKA, AJ
    LEE, CJ
    PINES, A
    [J]. JOURNAL OF MAGNETIC RESONANCE, 1988, 77 (02): : 274 - 293
  • [30] Side chain orientation from methyl 1H-1H residual dipolar couplings measured in highly deuterated proteins
    Sibille, N
    Bersch, B
    Covès, J
    Blackledge, M
    Brutscher, B
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (49) : 14616 - 14625